SCN1A Chromosome 2

Sodium voltage-gated channel alpha subunit 1
1884 variants 1 Drug Response 1883 Health Risk

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What This Gene Does
Voltage-dependent sodium channels are heteromeric complexes that regulate sodium exchange between intracellular and extracellular spaces and are essential for the generation and propagation of action potentials in muscle cells and neurons. Each sodium channel is composed of a large pore-forming, glycosylated alpha subunit and two smaller beta subunits. This gene encodes a sodium channel alpha subunit, which has four homologous domains, each of which contains six transmembrane regions. Allelic variants of this gene are associated with generalized epilepsy with febrile seizures and epileptic encephalopathy. Alternative splicing results in multiple transcript variants. The RefSeq Project has decided to create four representative RefSeq records. Three of the transcript variants are supported by experimental evidence and the fourth contains alternate 5' untranslated exons, the exact combination of which have not been experimentally confirmed for the full-length transcript. [provided by RefSeq, Oct 2015]
Gene Info
Gene Group
Sodium voltage-gated channel alpha subunits
Locus Type
gene with protein product
Location
2q24.3
Ensembl
ENSG00000144285
Associated Conditions (56)
Febrile seizures
familial
3a
carbamazepine response - Dosage
Early-infantile DEE
Inborn genetic diseases
Developmental and epileptic encephalopathy 6B
Migraine
familial hemiplegic
3
Generalized epilepsy with febrile seizures plus
type 2
SCN1A-related disorder
type 1
Severe myoclonic epilepsy in infancy
Focal epilepsy
Autosomal dominant epilepsy
Seizure
Developmental and epileptic encephalopathy
Bilateral tonic-clonic seizure
+36 more conditions
Key Variants
All Variants (1884)
RSID Category Clinical Significance Conditions
RS549232924 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS550770894 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS556893466 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS562208324 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Early-infantile DEE, Severe myoclonic epilepsy in infancy
RS566595038 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS570379164 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS570862962 Health Risk Conflicting classifications of pathogenicity SCN1A-related disorder, Early-infantile DEE, SCN1A-related disorder
RS575368466 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Early-infantile DEE, Inborn genetic diseases
RS575554223 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Migraine
RS587780445 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS727504138 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Early-infantile DEE, Severe myoclonic epilepsy in infancy
RS727504141 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS745918943 Health Risk Conflicting classifications of pathogenicity SCN1A-related disorder, Early-infantile DEE, SCN1A-related disorder
RS748333147 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS748537030 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS748747434 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS748816300 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Developmental and epileptic encephalopathy 6B, Early-infantile DEE
RS749638533 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE, Early-infantile DEE
RS749663451 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS750260160 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS750516202 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS750748658 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS750901301 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, Severe myoclonic epilepsy in infancy, Inborn genetic diseases
RS750943685 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS751514645 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, Inborn genetic diseases, Developmental and epileptic encephalopathy
RS751750112 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS752060724 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Generalized epilepsy with febrile seizures plus, type 2
RS752532497 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS752775574 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 6A, Early-infantile DEE
RS753890879 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS754032480 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, Developmental and epileptic encephalopathy 6B, Migraine
RS754661378 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS755323236 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS756238700 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS756519197 Health Risk Conflicting classifications of pathogenicity See cases, Early-infantile DEE, See cases
RS757851017 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS757923791 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS758871507 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Inborn genetic diseases, Early-infantile DEE
RS759815616 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS760249153 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS761062389 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS762310676 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS762317674 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, SCN1A-related disorder, Early-infantile DEE
RS762927460 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS763997333 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, SCN1A-related disorder, Early-infantile DEE
RS764174474 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS764507532 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS764865083 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS765728700 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS766332635 Health Risk Conflicting classifications of pathogenicity
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