SCN1A Chromosome 2

Sodium voltage-gated channel alpha subunit 1
1884 variants 1 Drug Response 1883 Health Risk

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What This Gene Does
Voltage-dependent sodium channels are heteromeric complexes that regulate sodium exchange between intracellular and extracellular spaces and are essential for the generation and propagation of action potentials in muscle cells and neurons. Each sodium channel is composed of a large pore-forming, glycosylated alpha subunit and two smaller beta subunits. This gene encodes a sodium channel alpha subunit, which has four homologous domains, each of which contains six transmembrane regions. Allelic variants of this gene are associated with generalized epilepsy with febrile seizures and epileptic encephalopathy. Alternative splicing results in multiple transcript variants. The RefSeq Project has decided to create four representative RefSeq records. Three of the transcript variants are supported by experimental evidence and the fourth contains alternate 5' untranslated exons, the exact combination of which have not been experimentally confirmed for the full-length transcript. [provided by RefSeq, Oct 2015]
Gene Info
Gene Group
Sodium voltage-gated channel alpha subunits
Locus Type
gene with protein product
Location
2q24.3
Ensembl
ENSG00000144285
Associated Conditions (56)
Febrile seizures
familial
3a
carbamazepine response - Dosage
Early-infantile DEE
Inborn genetic diseases
Developmental and epileptic encephalopathy 6B
Migraine
familial hemiplegic
3
Generalized epilepsy with febrile seizures plus
type 2
SCN1A-related disorder
type 1
Severe myoclonic epilepsy in infancy
Focal epilepsy
Autosomal dominant epilepsy
Seizure
Developmental and epileptic encephalopathy
Bilateral tonic-clonic seizure
+36 more conditions
Key Variants
All Variants (1884)
RSID Category Clinical Significance Conditions
RS1336507340 Health Risk Conflicting classifications of pathogenicity Intellectual disability, Early-infantile DEE, Intellectual disability
RS1351809843 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Early-infantile DEE, Severe myoclonic epilepsy in infancy
RS1358776988 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1373733895 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, SCN1A-related disorder, Early-infantile DEE
RS1379533666 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS138181528 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS138357595 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS138376436 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Developmental and epileptic encephalopathy 6B, Early-infantile DEE
RS138799232 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1390205269 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS139403702 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Severe myoclonic epilepsy in infancy
RS1396476288 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS140035595 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Developmental and epileptic encephalopathy 6B
RS141188608 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Generalized epilepsy with febrile seizures plus, type 2
RS142037381 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS142910512 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS143088184 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS144595013 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS144691638 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS145035963 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS145296488 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS145410000 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Migraine
RS1454723706 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS145662732 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, SCN1A-related disorder, Early-infantile DEE
RS145670933 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS1457387893 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1457806589 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS146374754 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Inborn genetic diseases, Early-infantile DEE
RS146733308 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS146878122 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Early-infantile DEE, Severe myoclonic epilepsy in infancy
RS1468825512 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS1484321812 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS149225252 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Early-infantile DEE
RS149315236 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Generalized epilepsy with febrile seizures plus, type 2
RS149715258 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS150154265 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS150155252 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS150964803 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS1553520425 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS1553520446 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1553520532 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1553521053 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1553521524 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Early-infantile DEE
RS1553523204 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS1553525313 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, Developmental and epileptic encephalopathy
RS1553525337 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Epileptic encephalopathy
RS1553531410 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1553532470 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1553540263 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1553546728 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
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