SCN1A Chromosome 2

Sodium voltage-gated channel alpha subunit 1
1884 variants 1 Drug Response 1883 Health Risk

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What This Gene Does
Voltage-dependent sodium channels are heteromeric complexes that regulate sodium exchange between intracellular and extracellular spaces and are essential for the generation and propagation of action potentials in muscle cells and neurons. Each sodium channel is composed of a large pore-forming, glycosylated alpha subunit and two smaller beta subunits. This gene encodes a sodium channel alpha subunit, which has four homologous domains, each of which contains six transmembrane regions. Allelic variants of this gene are associated with generalized epilepsy with febrile seizures and epileptic encephalopathy. Alternative splicing results in multiple transcript variants. The RefSeq Project has decided to create four representative RefSeq records. Three of the transcript variants are supported by experimental evidence and the fourth contains alternate 5' untranslated exons, the exact combination of which have not been experimentally confirmed for the full-length transcript. [provided by RefSeq, Oct 2015]
Gene Info
Gene Group
Sodium voltage-gated channel alpha subunits
Locus Type
gene with protein product
Location
2q24.3
Ensembl
ENSG00000144285
Associated Conditions (56)
Febrile seizures
familial
3a
carbamazepine response - Dosage
Early-infantile DEE
Inborn genetic diseases
Developmental and epileptic encephalopathy 6B
Migraine
familial hemiplegic
3
Generalized epilepsy with febrile seizures plus
type 2
SCN1A-related disorder
type 1
Severe myoclonic epilepsy in infancy
Focal epilepsy
Autosomal dominant epilepsy
Seizure
Developmental and epileptic encephalopathy
Bilateral tonic-clonic seizure
+36 more conditions
Key Variants
All Variants (1884)
RSID Category Clinical Significance Conditions
RS2105432939 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS2105462218 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS2105476313 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Early-infantile DEE
RS2105570494 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS2105593894 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS2105609833 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS2105792738 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE, Early-infantile DEE
RS2105808409 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Generalized epilepsy with febrile seizures plus
RS2105816934 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS2105817051 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Early-infantile DEE
RS2105889888 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS2105889917 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Early-infantile DEE
RS2105889931 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS2105982111 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS2468081385 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS2468182935 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS2468200799 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS2468324092 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS2468341232 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Severe myoclonic epilepsy in infancy
RS2468408602 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS2468495160 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS368663649 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS368785509 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Migraine
RS368834365 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS369178649 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS369688121 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Migraine
RS370037455 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS370481828 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS370793418 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS370857858 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Migraine
RS371243629 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS371596040 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS372372558 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS372749240 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS373417440 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS373772491 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS374501252 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, SCN1A-related disorder, Early-infantile DEE
RS374767754 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS375896308 Health Risk Conflicting classifications of pathogenicity SUDDEN INFANT DEATH SYNDROME, Early-infantile DEE, SUDDEN INFANT DEATH SYNDROME
RS376669368 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS376901032 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS397514458 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Early-infantile DEE, Early-infantile DEE
RS398123591 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS398123592 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS398123596 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, Developmental and epileptic encephalopathy
RS398123597 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS398123600 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS537722606 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS543436497 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS544692790 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
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