SCN1A Chromosome 2

Sodium voltage-gated channel alpha subunit 1
1884 variants 1 Drug Response 1883 Health Risk

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What This Gene Does
Voltage-dependent sodium channels are heteromeric complexes that regulate sodium exchange between intracellular and extracellular spaces and are essential for the generation and propagation of action potentials in muscle cells and neurons. Each sodium channel is composed of a large pore-forming, glycosylated alpha subunit and two smaller beta subunits. This gene encodes a sodium channel alpha subunit, which has four homologous domains, each of which contains six transmembrane regions. Allelic variants of this gene are associated with generalized epilepsy with febrile seizures and epileptic encephalopathy. Alternative splicing results in multiple transcript variants. The RefSeq Project has decided to create four representative RefSeq records. Three of the transcript variants are supported by experimental evidence and the fourth contains alternate 5' untranslated exons, the exact combination of which have not been experimentally confirmed for the full-length transcript. [provided by RefSeq, Oct 2015]
Gene Info
Gene Group
Sodium voltage-gated channel alpha subunits
Locus Type
gene with protein product
Location
2q24.3
Ensembl
ENSG00000144285
Associated Conditions (56)
Febrile seizures
familial
3a
carbamazepine response - Dosage
Early-infantile DEE
Inborn genetic diseases
Developmental and epileptic encephalopathy 6B
Migraine
familial hemiplegic
3
Generalized epilepsy with febrile seizures plus
type 2
SCN1A-related disorder
type 1
Severe myoclonic epilepsy in infancy
Focal epilepsy
Autosomal dominant epilepsy
Seizure
Developmental and epileptic encephalopathy
Bilateral tonic-clonic seizure
+36 more conditions
Key Variants
All Variants (1884)
RSID Category Clinical Significance Conditions
RS1553547454 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1553547528 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1553550618 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE, Early-infantile DEE
RS1553552378 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1559100385 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1559104676 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Severe myoclonic epilepsy in infancy
RS1559114408 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS1559114837 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Developmental and epileptic encephalopathy, Early-infantile DEE
RS1559122124 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Acute encephalopathy, Early-infantile DEE
RS1559144956 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1559237625 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS1559245847 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Migraine
RS1573984593 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Developmental and epileptic encephalopathy 6B, Early-infantile DEE
RS1574052546 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Generalized epilepsy with febrile seizures plus, type 2
RS1574060743 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1574214734 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 1, Generalized epilepsy with febrile seizures plus
RS1574234690 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Generalized epilepsy with febrile seizures plus, type 2
RS1574373061 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1684688433 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS1689190343 Health Risk Conflicting classifications of pathogenicity SCN1A-related epilepsy syndrome, recessive, Early-infantile DEE
RS1689245014 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1689333436 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1689684958 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Early-infantile DEE, Severe myoclonic epilepsy in infancy
RS1689710741 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1690574155 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Severe myoclonic epilepsy in infancy
RS1690577824 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1692546613 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1692905818 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Migraine
RS1696346826 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1696400496 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Developmental and epileptic encephalopathy 6B, Migraine
RS1696621654 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1696890186 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1697296215 Health Risk Conflicting classifications of pathogenicity SUDDEN INFANT DEATH SYNDROME, Inborn genetic diseases, SUDDEN INFANT DEATH SYNDROME
RS1697479557 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1697877323 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Severe myoclonic epilepsy in infancy
RS1697892980 Health Risk Conflicting classifications of pathogenicity Epilepsy, Early-infantile DEE, Epilepsy
RS1698033637 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1698937795 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS1699357096 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS184524479 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Inborn genetic diseases, Early-infantile DEE
RS185760342 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS189183531 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS200176684 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS201079458 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS201592683 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS201604887 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS201870762 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS201905405 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS201985242 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS2105427253 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
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