SCN1A Chromosome 2

Sodium voltage-gated channel alpha subunit 1
1884 variants 1 Drug Response 1883 Health Risk

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What This Gene Does
Voltage-dependent sodium channels are heteromeric complexes that regulate sodium exchange between intracellular and extracellular spaces and are essential for the generation and propagation of action potentials in muscle cells and neurons. Each sodium channel is composed of a large pore-forming, glycosylated alpha subunit and two smaller beta subunits. This gene encodes a sodium channel alpha subunit, which has four homologous domains, each of which contains six transmembrane regions. Allelic variants of this gene are associated with generalized epilepsy with febrile seizures and epileptic encephalopathy. Alternative splicing results in multiple transcript variants. The RefSeq Project has decided to create four representative RefSeq records. Three of the transcript variants are supported by experimental evidence and the fourth contains alternate 5' untranslated exons, the exact combination of which have not been experimentally confirmed for the full-length transcript. [provided by RefSeq, Oct 2015]
Gene Info
Gene Group
Sodium voltage-gated channel alpha subunits
Locus Type
gene with protein product
Location
2q24.3
Ensembl
ENSG00000144285
Associated Conditions (56)
Febrile seizures
familial
3a
carbamazepine response - Dosage
Early-infantile DEE
Inborn genetic diseases
Developmental and epileptic encephalopathy 6B
Migraine
familial hemiplegic
3
Generalized epilepsy with febrile seizures plus
type 2
SCN1A-related disorder
type 1
Severe myoclonic epilepsy in infancy
Focal epilepsy
Autosomal dominant epilepsy
Seizure
Developmental and epileptic encephalopathy
Bilateral tonic-clonic seizure
+36 more conditions
Key Variants
All Variants (1884)
RSID Category Clinical Significance Conditions
RS3812718 Drug Response drug response Febrile seizures, familial, 3a
RS1000651886 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1025532519 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1057518252 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1057521746 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Early-infantile DEE
RS1057522587 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Inborn genetic diseases, Early-infantile DEE
RS1060502185 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1060502186 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1064795355 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy 6B, Developmental and epileptic encephalopathy 6B
RS1064797265 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1131691599 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1131691600 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS114137271 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS116478064 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, SCN1A-related disorder, Early-infantile DEE
RS1166000241 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS1170665581 Health Risk Conflicting classifications of pathogenicity
RS1183164202 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1197551054 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS121917906 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 1, Inborn genetic diseases
RS121917910 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Migraine, familial hemiplegic
RS121917949 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Severe myoclonic epilepsy in infancy, Severe myoclonic epilepsy in infancy
RS121917960 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Inborn genetic diseases, Early-infantile DEE
RS121917973 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Generalized epilepsy with febrile seizures plus, type 2
RS121917983 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS121917992 Health Risk Conflicting classifications of pathogenicity Focal epilepsy, Severe myoclonic epilepsy in infancy, Early-infantile DEE
RS121918622 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Severe myoclonic epilepsy in infancy
RS121918629 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Severe myoclonic epilepsy in infancy
RS121918735 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Seizure, Severe myoclonic epilepsy in infancy
RS121918739 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Severe myoclonic epilepsy in infancy
RS121918748 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Early-infantile DEE
RS121918750 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Developmental and epileptic encephalopathy, Generalized epilepsy with febrile seizures plus
RS121918763 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Early-infantile DEE, Severe myoclonic epilepsy in infancy
RS121918768 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Early-infantile DEE, Severe myoclonic epilepsy in infancy
RS121918771 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Migraine, familial hemiplegic
RS121918777 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, SCN1A-related disorder, Early-infantile DEE
RS121918789 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Generalized epilepsy with febrile seizures plus, type 2
RS121918799 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS121918802 Health Risk Conflicting classifications of pathogenicity West syndrome, Severe myoclonic epilepsy in infancy, Generalized epilepsy with febrile seizures plus
RS121918807 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Inborn genetic diseases, Early-infantile DEE
RS121918808 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Inborn genetic diseases, Early-infantile DEE
RS121918817 Health Risk Conflicting classifications of pathogenicity Autism, Severe myoclonic epilepsy in infancy, Epilepsy
RS1226603266 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1260685558 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Developmental and epileptic encephalopathy 6B
RS1260934774 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1266240114 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1271824691 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS1283681963 Health Risk Conflicting classifications of pathogenicity Seizure, Early-infantile DEE, Seizure
RS1295072436 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, SCN1A-related disorder, Early-infantile DEE
RS1298765257 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS1315723631 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
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