HSPG2 Chromosome 1

Heparan sulfate proteoglycan 2
312 variants 312 Health Risk

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What This Gene Does
This gene encodes the perlecan protein, which consists of a core protein to which three long chains of glycosaminoglycans (heparan sulfate or chondroitin sulfate) are attached. The perlecan protein is a large multidomain proteoglycan that binds to and cross-links many extracellular matrix components and cell-surface molecules. It has been shown that this protein interacts with laminin, prolargin, collagen type IV, FGFBP1, FBLN2, FGF7 and transthyretin, etc., and it plays essential roles in multiple biological activities. Perlecan is a key component of the vascular extracellular matrix, where it helps to maintain the endothelial barrier function. It is a potent inhibitor of smooth muscle cell proliferation and is thus thought to help maintain vascular homeostasis. It can also promote growth factor (e.g., FGF2) activity and thus stimulate endothelial growth and re-generation. It is a major component of basement membranes, where it is involved in the stabilization of other molecules as well as being involved with glomerular permeability to macromolecules and cell adhesion. Mutations in this gene cause Schwartz-Jampel syndrome type 1, Silverman-Handmaker type of dyssegmental dysplasia, and tardive dyskinesia. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, May 2014]
Gene Info
Gene Group
"Proteoglycans|I-set domain containing"
Locus Type
gene with protein product
Location
1p36.12
Ensembl
ENSG00000142798
Associated Conditions (17)
HSPG2-related disorder
Inborn genetic diseases
Schwartz-Jampel syndrome
Lethal Kniest-like syndrome
Connective tissue disorder
Multiple congenital anomalies/dysmorphic syndrome
Schwartz-Jampel syndrome type 1
Lymphoma
Intellectual disability
See cases
Cervical cancer
Ovarian serous cystadenocarcinoma
Malignant tumor of esophagus
Childhood-onset schizophrenia
Autosomal recessive HSPG2-related disorders
Malignant tumor of urinary bladder
Abnormal facial shape
Key Variants
RS1057521178
Conflicting classifications of pathogenicity
Health Risk
RS111558823
Conflicting classifications of pathogenicity
HSPG2-related disorder, HSPG2-related disorder
Health Risk
RS111846397
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS111866498
Conflicting classifications of pathogenicity
Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Connective tissue disorder
Health Risk
RS113652076
Conflicting classifications of pathogenicity
Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Connective tissue disorder
Health Risk
RS113695182
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS116316900
Conflicting classifications of pathogenicity
Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, Inborn genetic diseases
Health Risk
RS116630187
Conflicting classifications of pathogenicity
Lethal Kniest-like syndrome, Connective tissue disorder, HSPG2-related disorder
Health Risk
RS1336552092
Conflicting classifications of pathogenicity
Schwartz-Jampel syndrome, Schwartz-Jampel syndrome type 1, Schwartz-Jampel syndrome
Health Risk
RS138459752
Conflicting classifications of pathogenicity
Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, HSPG2-related disorder
Health Risk
RS138460117
Conflicting classifications of pathogenicity
Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, HSPG2-related disorder
Health Risk
RS138518139
Conflicting classifications of pathogenicity
Health Risk
All Variants (312)
RSID Category Clinical Significance Conditions
RS1057521178 Health Risk Conflicting classifications of pathogenicity
RS111558823 Health Risk Conflicting classifications of pathogenicity HSPG2-related disorder, HSPG2-related disorder
RS111846397 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS111866498 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Connective tissue disorder
RS113652076 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Connective tissue disorder
RS113695182 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS116316900 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, Inborn genetic diseases
RS116630187 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Connective tissue disorder, HSPG2-related disorder
RS1336552092 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Schwartz-Jampel syndrome type 1, Schwartz-Jampel syndrome
RS138459752 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, HSPG2-related disorder
RS138460117 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, HSPG2-related disorder
RS138518139 Health Risk Conflicting classifications of pathogenicity
RS138583401 Health Risk Conflicting classifications of pathogenicity Lymphoma, Lymphoma
RS138957986 Health Risk Conflicting classifications of pathogenicity
RS139001173 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Connective tissue disorder
RS139220302 Health Risk Conflicting classifications of pathogenicity
RS139605410 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Schwartz-Jampel syndrome
RS139743858 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS139794766 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Connective tissue disorder
RS139838884 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Inborn genetic diseases
RS139842104 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Schwartz-Jampel syndrome
RS139855779 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Schwartz-Jampel syndrome
RS139873789 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, Inborn genetic diseases
RS139926503 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS140056847 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, Lethal Kniest-like syndrome
RS140067347 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Schwartz-Jampel syndrome
RS140134749 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Schwartz-Jampel syndrome
RS140509598 Health Risk Conflicting classifications of pathogenicity Connective tissue disorder, HSPG2-related disorder, Connective tissue disorder
RS140954748 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, HSPG2-related disorder
RS141280063 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, HSPG2-related disorder
RS141435008 Health Risk Conflicting classifications of pathogenicity
RS141563188 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, HSPG2-related disorder, Inborn genetic diseases
RS141901178 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS141936971 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, Connective tissue disorder
RS142062738 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS142071466 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Schwartz-Jampel syndrome
RS142288625 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Schwartz-Jampel syndrome
RS142433309 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, HSPG2-related disorder
RS142736845 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, Connective tissue disorder
RS142939330 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, HSPG2-related disorder
RS143015575 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, HSPG2-related disorder
RS143109401 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Inborn genetic diseases
RS143274889 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, See cases
RS143437991 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, Lethal Kniest-like syndrome
RS143669458 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, Connective tissue disorder
RS143736974 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Connective tissue disorder
RS144122107 Health Risk Conflicting classifications of pathogenicity
RS144447618 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome type 1, Lethal Kniest-like syndrome
RS144496753 Health Risk Conflicting classifications of pathogenicity HSPG2-related disorder, HSPG2-related disorder
RS145048530 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Inborn genetic diseases
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