HSPG2 Chromosome 1

Heparan sulfate proteoglycan 2
312 variants 312 Health Risk

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What This Gene Does
This gene encodes the perlecan protein, which consists of a core protein to which three long chains of glycosaminoglycans (heparan sulfate or chondroitin sulfate) are attached. The perlecan protein is a large multidomain proteoglycan that binds to and cross-links many extracellular matrix components and cell-surface molecules. It has been shown that this protein interacts with laminin, prolargin, collagen type IV, FGFBP1, FBLN2, FGF7 and transthyretin, etc., and it plays essential roles in multiple biological activities. Perlecan is a key component of the vascular extracellular matrix, where it helps to maintain the endothelial barrier function. It is a potent inhibitor of smooth muscle cell proliferation and is thus thought to help maintain vascular homeostasis. It can also promote growth factor (e.g., FGF2) activity and thus stimulate endothelial growth and re-generation. It is a major component of basement membranes, where it is involved in the stabilization of other molecules as well as being involved with glomerular permeability to macromolecules and cell adhesion. Mutations in this gene cause Schwartz-Jampel syndrome type 1, Silverman-Handmaker type of dyssegmental dysplasia, and tardive dyskinesia. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, May 2014]
Gene Info
Gene Group
"Proteoglycans|I-set domain containing"
Locus Type
gene with protein product
Location
1p36.12
Ensembl
ENSG00000142798
Associated Conditions (17)
HSPG2-related disorder
Inborn genetic diseases
Schwartz-Jampel syndrome
Lethal Kniest-like syndrome
Connective tissue disorder
Multiple congenital anomalies/dysmorphic syndrome
Schwartz-Jampel syndrome type 1
Lymphoma
Intellectual disability
See cases
Cervical cancer
Ovarian serous cystadenocarcinoma
Malignant tumor of esophagus
Childhood-onset schizophrenia
Autosomal recessive HSPG2-related disorders
Malignant tumor of urinary bladder
Abnormal facial shape
Key Variants
RS1057521178
Conflicting classifications of pathogenicity
Health Risk
RS111558823
Conflicting classifications of pathogenicity
HSPG2-related disorder, HSPG2-related disorder
Health Risk
RS111846397
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS111866498
Conflicting classifications of pathogenicity
Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Connective tissue disorder
Health Risk
RS113652076
Conflicting classifications of pathogenicity
Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Connective tissue disorder
Health Risk
RS113695182
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS116316900
Conflicting classifications of pathogenicity
Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, Inborn genetic diseases
Health Risk
RS116630187
Conflicting classifications of pathogenicity
Lethal Kniest-like syndrome, Connective tissue disorder, HSPG2-related disorder
Health Risk
RS1336552092
Conflicting classifications of pathogenicity
Schwartz-Jampel syndrome, Schwartz-Jampel syndrome type 1, Schwartz-Jampel syndrome
Health Risk
RS138459752
Conflicting classifications of pathogenicity
Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, HSPG2-related disorder
Health Risk
RS138460117
Conflicting classifications of pathogenicity
Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, HSPG2-related disorder
Health Risk
RS138518139
Conflicting classifications of pathogenicity
Health Risk
All Variants (312)
RSID Category Clinical Significance Conditions
RS537908254 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Inborn genetic diseases
RS538216424 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, Lethal Kniest-like syndrome
RS540961117 Health Risk Conflicting classifications of pathogenicity HSPG2-related disorder, HSPG2-related disorder
RS544172715 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, Lethal Kniest-like syndrome
RS544392697 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Schwartz-Jampel syndrome
RS544565016 Health Risk Conflicting classifications of pathogenicity
RS548583670 Health Risk Conflicting classifications of pathogenicity See cases, Inborn genetic diseases, See cases
RS549778143 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Schwartz-Jampel syndrome
RS552716935 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Schwartz-Jampel syndrome
RS553885469 Health Risk Conflicting classifications of pathogenicity HSPG2-related disorder, HSPG2-related disorder
RS557379530 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS557762861 Health Risk Conflicting classifications of pathogenicity HSPG2-related disorder, HSPG2-related disorder
RS55875654 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Schwartz-Jampel syndrome
RS560919408 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Schwartz-Jampel syndrome
RS561008892 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS561723497 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS565594406 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome type 1, Schwartz-Jampel syndrome
RS568526447 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Schwartz-Jampel syndrome
RS570850437 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome type 1, Schwartz-Jampel syndrome type 1
RS572839851 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, Lethal Kniest-like syndrome
RS573932867 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Schwartz-Jampel syndrome type 1
RS575126803 Health Risk Conflicting classifications of pathogenicity
RS576324046 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, Lethal Kniest-like syndrome
RS61743674 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, Lethal Kniest-like syndrome
RS62642502 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, HSPG2-related disorder
RS72866991 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Connective tissue disorder
RS745452531 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, Lethal Kniest-like syndrome
RS745452577 Health Risk Conflicting classifications of pathogenicity Childhood-onset schizophrenia, Schwartz-Jampel syndrome, Lethal Kniest-like syndrome
RS746413398 Health Risk Conflicting classifications of pathogenicity
RS746954804 Health Risk Conflicting classifications of pathogenicity
RS747704697 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, Lethal Kniest-like syndrome
RS749580877 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, Lethal Kniest-like syndrome
RS749712460 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, Lethal Kniest-like syndrome
RS750306743 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, Lethal Kniest-like syndrome
RS751458185 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS752099132 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, HSPG2-related disorder
RS753151119 Health Risk Conflicting classifications of pathogenicity
RS754643779 Health Risk Conflicting classifications of pathogenicity Connective tissue disorder, Connective tissue disorder
RS755442255 Health Risk Conflicting classifications of pathogenicity
RS756733330 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Schwartz-Jampel syndrome
RS756830539 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Schwartz-Jampel syndrome
RS758125762 Health Risk Conflicting classifications of pathogenicity Connective tissue disorder, Connective tissue disorder
RS758801322 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome type 1, Inborn genetic diseases
RS759562639 Health Risk Conflicting classifications of pathogenicity
RS761523501 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS761964111 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS762130127 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Schwartz-Jampel syndrome
RS763324083 Health Risk Conflicting classifications of pathogenicity
RS763389929 Health Risk Conflicting classifications of pathogenicity Lethal Kniest-like syndrome, Schwartz-Jampel syndrome, Lethal Kniest-like syndrome
RS764531754 Health Risk Conflicting classifications of pathogenicity Schwartz-Jampel syndrome, Lethal Kniest-like syndrome, Schwartz-Jampel syndrome
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