Genetic variant

rs28730837 a variant in the MPO gene

rs28730837 is a single-letter difference in the MPO gene, on chromosome 17. ClinVar, the public archive of variant interpretations, lists it as conflicting interpretations: laboratories that have assessed it do not agree on whether it matters. It has been reported in connection with Myeloperoxidase deficiency. Carrying it does not, on its own, mean you have or will develop any condition.

What is this?

Your DNA is a long sequence of four letters. At a few million positions, people commonly differ by a single letter; each of those positions is called a SNP (“snip”), and rs28730837 is the catalogue number of one of them, in the MPO gene. Which letters you carry there — one copy from each parent — is your genotype.

MPO (myeloperoxidase): Myeloperoxidase (MPO) is a heme protein synthesized during myeloid differentiation that constitutes the major component of neutrophil azurophilic granules. Produced as a single chain precursor, myeloperoxidase is subsequently cleaved into a light and heavy chain. The mature myeloperoxidase is a tetramer composed of 2 light chains and 2 heavy chains.

Gene description from NCBI Gene

Why might it matter?

ClinVar records this variant as conflicting interpretations, meaning laboratories that have assessed it do not agree on whether it matters. A classification describes the variant, not you: what it means for one person depends on their genotype, their family history and often on other genes and circumstances.

Conditions it has been reported with

Listed in ClinVar submissions for this variant. Being listed is a report of an association, not a statement that the variant causes the condition in any given person.

Do I have this variant?

If you have taken a consumer DNA test (23andMe, AncestryDNA and similar), you can download its raw data file and check. Create a free account, upload the file, and this page will show the letters you carry at rs28730837, if your test read this position.

Connect this with your blood results

A gene is a fixed instruction; a blood test shows what your body is doing now. CheckMyBloods reads the two side by side, so a variant can be set against the markers it could plausibly affect.

Blood markers do not diagnose a genetic condition, and a variant does not explain a blood result on its own. Together, with symptoms and family history, they give a clinician context.

What should I do next?

  1. Find out whether you carry it. Reading about a variant says nothing about you until you know your genotype.
  2. Put it in context. Add your blood results, so the variant can be read against what your body is doing.
  3. Ask questions. Dr. Hemsworth, our AI assistant, can explain this variant and your results in plain English.
  4. Take anything that worries you to a professional. A GP or genetic counsellor can order a confirmatory test and interpret it with your history.

This page is general information drawn from public research databases. It cannot diagnose anything, and it is not a substitute for advice from a doctor or genetic counsellor who knows your history.

Technical details

dbSNP ID
rs28730837
Gene
MPO
Position
chr17:58278036
ClinVar classification
Conflicting classifications of pathogenicity

Genome-wide association studies (13)

TraitRisk alleleOR / betaP-valueStudy
Basophil count A OR 0.1 3E-30 PubMed
PRTN3 protein levels A OR 0.21 4E-27 PubMed
Basophil percentage of white cells A β 0.092 5E-26 PubMed
Monocyte count G — 1E-23 PubMed
Monocyte percentage of white cells A β 0.086 3E-17 PubMed
Neutrophill count (UKB data field 30140) A β 0.055 2E-13 PubMed
Lymphocyte percentage of white cells A β 0.062 1E-12 PubMed
Basophil percentage of white cells variance A β 0.065 1E-12 PubMed
Basophil count variance A β 0.058 2E-10 PubMed
Basophil count G — 6E-10 PubMed
Blood cell traits latent factor 22 (white cell) — — 7E-10 PubMed
Monocyte count A β 0.061 2E-9 PubMed
Neutrophil percentage of white cells A β 0.061 2E-9 PubMed

Sources