NPC1 Chromosome 18
NPC intracellular cholesterol transporter 1
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What This Gene Does
This gene encodes a large protein that resides in the limiting membrane of endosomes and lysosomes and mediates intracellular cholesterol trafficking via binding of cholesterol to its N-terminal domain. It is predicted to have a cytoplasmic C-terminus, 13 transmembrane domains, and 3 large loops in the lumen of the endosome - the last loop being at the N-terminus. This protein transports low-density lipoproteins to late endosomal/lysosomal compartments where they are hydrolized and released as free cholesterol. Defects in this gene cause Niemann-Pick type C disease, a rare autosomal recessive neurodegenerative disorder characterized by over accumulation of cholesterol and glycosphingolipids in late endosomal/lysosomal compartments.[provided by RefSeq, Aug 2009]
Gene Info
Gene Group
Solute carrier family 65
Locus Type
gene with protein product
Location
18q11.2
Ensembl
ENSG00000141458
Associated Conditions (23)
Niemann-Pick disease
type C1
type C
Sphingomyelin/cholesterol lipidosis
NPC1-related disorder
Inborn genetic diseases
Dystonic disorder
Melanoma
Malignant tumor of esophagus
Papillary renal cell carcinoma type 1
Familial cancer of breast
Uterine corpus endometrial carcinoma
Russell-Silver syndrome
Nasopharyngeal carcinoma
juvenile form
Ovarian serous cystadenocarcinoma
Abnormality of metabolism/homeostasis
adult form
6 conditions
type C2
+3 more conditions
Key Variants
RS1046046139
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Niemann-Pick disease
Health Risk
RS1053321823
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, type C
Health Risk
RS1057517077
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Niemann-Pick disease
Health Risk
RS1057519229
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Niemann-Pick disease
Health Risk
RS1064793791
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Niemann-Pick disease
Health Risk
RS111256741
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, NPC1-related disorder
Health Risk
RS112387560
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, NPC1-related disorder
Health Risk
RS113371321
Conflicting classifications of pathogenicity
Dystonic disorder, Niemann-Pick disease, type C1
Health Risk
RS1192824648
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Niemann-Pick disease
Health Risk
RS120074132
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Niemann-Pick disease
Health Risk
RS1208252513
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Inborn genetic diseases
Health Risk
RS1234099104
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Niemann-Pick disease
Health Risk
All Variants (654)
| RSID | Category | Clinical Significance | Conditions |
|---|---|---|---|
| RS1046046139 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS1053321823 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, type C |
| RS1057517077 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS1057519229 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS1064793791 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS111256741 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS112387560 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS113371321 | Health Risk | Conflicting classifications of pathogenicity | Dystonic disorder, Niemann-Pick disease, type C1 |
| RS1192824648 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS120074132 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS1208252513 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Inborn genetic diseases |
| RS1234099104 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS1241975606 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS1243863645 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, type C |
| RS1273070261 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS1338658857 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS1364834942 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS1376430791 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS1380492295 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS138079168 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS138184115 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Inborn genetic diseases |
| RS141440861 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS1415921261 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS141659629 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS141892620 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Inborn genetic diseases |
| RS143797098 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS144415945 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Inborn genetic diseases |
| RS145101354 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Inborn genetic diseases |
| RS145145840 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Inborn genetic diseases |
| RS145227129 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS145236115 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS145297180 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Inborn genetic diseases |
| RS145362908 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS145666943 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS146105340 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS146874573 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS147021046 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS147419225 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS147795644 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS148078801 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS150334966 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS150602021 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS151125564 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Inborn genetic diseases |
| RS1555634618 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS1555634676 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS1555636685 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS1555638882 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS1567945743 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS1567949544 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS1567951608 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |