NPC1 Chromosome 18
NPC intracellular cholesterol transporter 1
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What This Gene Does
This gene encodes a large protein that resides in the limiting membrane of endosomes and lysosomes and mediates intracellular cholesterol trafficking via binding of cholesterol to its N-terminal domain. It is predicted to have a cytoplasmic C-terminus, 13 transmembrane domains, and 3 large loops in the lumen of the endosome - the last loop being at the N-terminus. This protein transports low-density lipoproteins to late endosomal/lysosomal compartments where they are hydrolized and released as free cholesterol. Defects in this gene cause Niemann-Pick type C disease, a rare autosomal recessive neurodegenerative disorder characterized by over accumulation of cholesterol and glycosphingolipids in late endosomal/lysosomal compartments.[provided by RefSeq, Aug 2009]
Gene Info
Gene Group
Solute carrier family 65
Locus Type
gene with protein product
Location
18q11.2
Ensembl
ENSG00000141458
Associated Conditions (23)
Niemann-Pick disease
type C1
type C
Sphingomyelin/cholesterol lipidosis
NPC1-related disorder
Inborn genetic diseases
Dystonic disorder
Melanoma
Malignant tumor of esophagus
Papillary renal cell carcinoma type 1
Familial cancer of breast
Uterine corpus endometrial carcinoma
Russell-Silver syndrome
Nasopharyngeal carcinoma
juvenile form
Ovarian serous cystadenocarcinoma
Abnormality of metabolism/homeostasis
adult form
6 conditions
type C2
+3 more conditions
Key Variants
RS1046046139
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Niemann-Pick disease
Health Risk
RS1053321823
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, type C
Health Risk
RS1057517077
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Niemann-Pick disease
Health Risk
RS1057519229
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Niemann-Pick disease
Health Risk
RS1064793791
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Niemann-Pick disease
Health Risk
RS111256741
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, NPC1-related disorder
Health Risk
RS112387560
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, NPC1-related disorder
Health Risk
RS113371321
Conflicting classifications of pathogenicity
Dystonic disorder, Niemann-Pick disease, type C1
Health Risk
RS1192824648
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Niemann-Pick disease
Health Risk
RS120074132
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Niemann-Pick disease
Health Risk
RS1208252513
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Inborn genetic diseases
Health Risk
RS1234099104
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Niemann-Pick disease
Health Risk
All Variants (654)
| RSID | Category | Clinical Significance | Conditions |
|---|---|---|---|
| RS71534236 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Uterine corpus endometrial carcinoma |
| RS746476066 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS748125983 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS748862167 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, type C |
| RS751951695 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS752728865 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS754323286 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS754664476 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS756405444 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS756756960 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS756815030 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, type C |
| RS757475924 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, type C |
| RS758687942 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS758829443 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS759901793 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS760529810 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS760861487 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS761459069 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS762517273 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS764548800 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS765825660 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS76615690 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS767148121 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS767683969 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS769468514 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS769612789 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Inborn genetic diseases |
| RS770700616 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS771523995 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS772150994 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS772427096 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS772565983 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS77289650 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS774588125 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS776181190 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS776389852 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS777156729 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS777356809 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS778096289 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS778890495 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS780019300 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS780100866 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS781065429 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, type C |
| RS794727371 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS80358251 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Nasopharyngeal carcinoma |
| RS886042901 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS886044570 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS886053666 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS887908568 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Inborn genetic diseases |
| RS893564568 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS899764342 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |