CACNA1A Chromosome 19

Calcium voltage-gated channel subunit alpha1 A
746 variants 746 Health Risk

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What This Gene Does
Voltage-dependent calcium channels mediate the entry of calcium ions into excitable cells, and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, and gene expression. Calcium channels are multisubunit complexes composed of alpha-1, beta, alpha-2/delta, and gamma subunits. The channel activity is directed by the pore-forming alpha-1 subunit, whereas, the others act as auxiliary subunits regulating this activity. The distinctive properties of the calcium channel types are related primarily to the expression of a variety of alpha-1 isoforms, alpha-1A, B, C, D, E, and S. This gene encodes the alpha-1A subunit, which is predominantly expressed in neuronal tissue. Mutations in this gene are associated with 2 neurologic disorders, familial hemiplegic migraine and episodic ataxia 2. This gene also exhibits polymorphic variation due to (CAG)n-repeats. Multiple transcript variants encoding different isoforms have been found for this gene. In one set of transcript variants, the (CAG)n-repeats occur in the 3' UTR, and are not associated with any disease. But in another set of variants, an insertion extends the coding region to include the (CAG)n-repeats which encode a polyglutamine tract. Expansion of the (CAG)n-repeats from the normal 4-18 to 21-33 in the coding region is associated with spinocerebellar ataxia 6. [provided by RefSeq, Jul 2016]
Gene Info
Gene Group
Calcium voltage-gated channel alpha1 subunits
Locus Type
gene with protein product
Location
19p13.13
Ensembl
ENSG00000141837
Associated Conditions (60)
Episodic ataxia type 2
Developmental and epileptic encephalopathy
42
Inborn genetic diseases
CACNA1A-related disorder
Spastic paraparesis
Cerebellar ataxia
Intention tremor
Dysarthria
Mild global developmental delay
Intellectual disability
Cerebellar atrophy
52
Spinocerebellar ataxia type 6
Migraine
familial hemiplegic
1
Tip-toe gait
Hereditary episodic ataxia
Seizure
+40 more conditions
Key Variants
RS1005361810
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1006425986
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1010331313
Conflicting classifications of pathogenicity
Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
Health Risk
RS1013100046
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1032588483
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1033214914
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1038705410
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1042634748
Conflicting classifications of pathogenicity
Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
Health Risk
RS1057518615
Conflicting classifications of pathogenicity
CACNA1A-related disorder, CACNA1A-related disorder
Health Risk
RS1057518779
Conflicting classifications of pathogenicity
Spastic paraparesis, Cerebellar ataxia, Intention tremor
Health Risk
RS1057519429
Conflicting classifications of pathogenicity
Cerebellar ataxia, Intellectual disability, Cerebellar atrophy
Health Risk
RS1057521565
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
All Variants (746)
RSID Category Clinical Significance Conditions
RS750826355 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS751044309 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS751515136 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS751726770 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS751926317 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS751947412 Health Risk Conflicting classifications of pathogenicity Spinocerebellar ataxia type 6, Developmental and epileptic encephalopathy, 42
RS752075131 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Developmental and epileptic encephalopathy, 42
RS752513542 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS752824390 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS752902118 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS753077104 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS753196787 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS753467037 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS753798870 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS753884600 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS754208553 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS754317278 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS754326939 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS754935637 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS754998423 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS755099305 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS755107633 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS755279579 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS755749925 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS756038056 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS756780624 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS756972061 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS757026025 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS757291476 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS757715357 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS758320697 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS758409135 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS758625682 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS758786727 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS758924907 Health Risk Conflicting classifications of pathogenicity See cases, Inborn genetic diseases, CACNA1A-related disorder
RS759331923 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Developmental and epileptic encephalopathy, 42
RS759576380 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS760428308 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Episodic ataxia type 2, Developmental and epileptic encephalopathy
RS760682283 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS760744104 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Episodic ataxia type 2, Developmental and epileptic encephalopathy
RS760816963 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS760994682 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS761136437 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS761560224 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS762006290 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS762262807 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS762288499 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS762343454 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS762396014 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS763944721 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
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