CACNA1A Chromosome 19

Calcium voltage-gated channel subunit alpha1 A
746 variants 746 Health Risk

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What This Gene Does
Voltage-dependent calcium channels mediate the entry of calcium ions into excitable cells, and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, and gene expression. Calcium channels are multisubunit complexes composed of alpha-1, beta, alpha-2/delta, and gamma subunits. The channel activity is directed by the pore-forming alpha-1 subunit, whereas, the others act as auxiliary subunits regulating this activity. The distinctive properties of the calcium channel types are related primarily to the expression of a variety of alpha-1 isoforms, alpha-1A, B, C, D, E, and S. This gene encodes the alpha-1A subunit, which is predominantly expressed in neuronal tissue. Mutations in this gene are associated with 2 neurologic disorders, familial hemiplegic migraine and episodic ataxia 2. This gene also exhibits polymorphic variation due to (CAG)n-repeats. Multiple transcript variants encoding different isoforms have been found for this gene. In one set of transcript variants, the (CAG)n-repeats occur in the 3' UTR, and are not associated with any disease. But in another set of variants, an insertion extends the coding region to include the (CAG)n-repeats which encode a polyglutamine tract. Expansion of the (CAG)n-repeats from the normal 4-18 to 21-33 in the coding region is associated with spinocerebellar ataxia 6. [provided by RefSeq, Jul 2016]
Gene Info
Gene Group
Calcium voltage-gated channel alpha1 subunits
Locus Type
gene with protein product
Location
19p13.13
Ensembl
ENSG00000141837
Associated Conditions (60)
Episodic ataxia type 2
Developmental and epileptic encephalopathy
42
Inborn genetic diseases
CACNA1A-related disorder
Spastic paraparesis
Cerebellar ataxia
Intention tremor
Dysarthria
Mild global developmental delay
Intellectual disability
Cerebellar atrophy
52
Spinocerebellar ataxia type 6
Migraine
familial hemiplegic
1
Tip-toe gait
Hereditary episodic ataxia
Seizure
+40 more conditions
Key Variants
RS1005361810
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1006425986
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1010331313
Conflicting classifications of pathogenicity
Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
Health Risk
RS1013100046
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1032588483
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1033214914
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1038705410
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1042634748
Conflicting classifications of pathogenicity
Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
Health Risk
RS1057518615
Conflicting classifications of pathogenicity
CACNA1A-related disorder, CACNA1A-related disorder
Health Risk
RS1057518779
Conflicting classifications of pathogenicity
Spastic paraparesis, Cerebellar ataxia, Intention tremor
Health Risk
RS1057519429
Conflicting classifications of pathogenicity
Cerebellar ataxia, Intellectual disability, Cerebellar atrophy
Health Risk
RS1057521565
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
All Variants (746)
RSID Category Clinical Significance Conditions
RS1374160355 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS1382705855 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1390782540 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS1406066197 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS141963371 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS1555767914 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 1
RS1568446845 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1568471977 Health Risk Conflicting classifications of pathogenicity CACNA1A-related disorder, Seizure, CACNA1A-related disorder
RS1568473283 Health Risk Conflicting classifications of pathogenicity Spinocerebellar ataxia type 6, Spinocerebellar ataxia type 6
RS1568485068 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1568546568 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS1568546593 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1568574634 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 1
RS1599276914 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS1599276954 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1599292506 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 1
RS1599294284 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1600292507 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS16024 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Developmental and epileptic encephalopathy, 42
RS16052 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS16054 Health Risk Conflicting classifications of pathogenicity Spinocerebellar ataxia type 6, Spinocerebellar ataxia type 6
RS17846921 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS17846928 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS182161386 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS184723350 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS185034915 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS187259531 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS187393245 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS188863534 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS190471428 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS190551509 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS199512932 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS199745070 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS199841998 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS199850826 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Episodic ataxia type 2, Developmental and epileptic encephalopathy
RS199886234 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS200093958 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Developmental and epileptic encephalopathy, 42
RS200277127 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS200333359 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 1
RS200850308 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS201200430 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS201230929 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS201236364 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS201269793 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 1
RS201311000 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS201350764 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS201398669 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS201647627 Health Risk Conflicting classifications of pathogenicity SUDDEN INFANT DEATH SYNDROME, Developmental and epileptic encephalopathy, 42
RS201666606 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS201789073 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
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