SLC19A3 Chromosome 2

Solute carrier family 19 member 3
101 variants 101 Health Risk

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What This Gene Does
This gene encodes a ubiquitously expressed transmembrane thiamine transporter that lacks folate transport activity. Mutations in this gene cause biotin-responsive basal ganglia disease (BBGD); a recessive disorder manifested in childhood that progresses to chronic encephalopathy, dystonia, quadriparesis, and death if untreated. Patients with BBGD have bilateral necrosis in the head of the caudate nucleus and in the putamen. Administration of high doses of biotin in the early progression of the disorder eliminates pathological symptoms while delayed treatment results in residual paraparesis, mild cognitive disability, or dystonia. Administration of thiamine is ineffective in the treatment of this disorder. Experiments have failed to show that this protein can transport biotin. Mutations in this gene also cause a Wernicke's-like encephalopathy.[provided by RefSeq, Jan 2010]
Gene Info
Gene Group
Solute carrier family 19
Locus Type
gene with protein product
Location
2q36.3
Ensembl
ENSG00000135917
Associated Conditions (5)
Biotin-responsive basal ganglia disease
Inborn genetic diseases
SLC19A3-related disorder
Intellectual disability
Thiamine metabolism dysfunction syndrome 2 (biotin/thiamine-responsive basal ganglia disease type)
Key Variants
RS1064795112
Conflicting classifications of pathogenicity
Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
Health Risk
RS1131691615
Conflicting classifications of pathogenicity
Health Risk
RS116533505
Conflicting classifications of pathogenicity
Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
Health Risk
RS1233252115
Conflicting classifications of pathogenicity
Biotin-responsive basal ganglia disease, Inborn genetic diseases, Biotin-responsive basal ganglia disease
Health Risk
RS138363524
Conflicting classifications of pathogenicity
Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
Health Risk
RS138839321
Conflicting classifications of pathogenicity
Biotin-responsive basal ganglia disease, Inborn genetic diseases, Biotin-responsive basal ganglia disease
Health Risk
RS141957107
Conflicting classifications of pathogenicity
Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
Health Risk
RS142166552
Conflicting classifications of pathogenicity
Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
Health Risk
RS145288025
Conflicting classifications of pathogenicity
Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
Health Risk
RS145804755
Conflicting classifications of pathogenicity
Biotin-responsive basal ganglia disease, SLC19A3-related disorder, Biotin-responsive basal ganglia disease
Health Risk
RS146949876
Conflicting classifications of pathogenicity
Biotin-responsive basal ganglia disease, Inborn genetic diseases, Biotin-responsive basal ganglia disease
Health Risk
RS147205930
Conflicting classifications of pathogenicity
Biotin-responsive basal ganglia disease, SLC19A3-related disorder, Biotin-responsive basal ganglia disease
Health Risk
All Variants (101)
RSID Category Clinical Significance Conditions
RS1064795112 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS1131691615 Health Risk Conflicting classifications of pathogenicity
RS116533505 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS1233252115 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Inborn genetic diseases, Biotin-responsive basal ganglia disease
RS138363524 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS138839321 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Inborn genetic diseases, Biotin-responsive basal ganglia disease
RS141957107 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS142166552 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS145288025 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS145804755 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, SLC19A3-related disorder, Biotin-responsive basal ganglia disease
RS146949876 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Inborn genetic diseases, Biotin-responsive basal ganglia disease
RS147205930 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, SLC19A3-related disorder, Biotin-responsive basal ganglia disease
RS147502239 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, SLC19A3-related disorder, Biotin-responsive basal ganglia disease
RS149806390 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS150523975 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS1574560025 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS188532608 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS199558186 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Intellectual disability, Inborn genetic diseases
RS199970847 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS200971390 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS201274864 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS201544540 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS367737262 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Inborn genetic diseases, Biotin-responsive basal ganglia disease
RS368364131 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, SLC19A3-related disorder, Biotin-responsive basal ganglia disease
RS368717276 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Inborn genetic diseases, Biotin-responsive basal ganglia disease
RS372637185 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS375099581 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS376187918 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS563607795 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS566837952 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS746794574 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS754794859 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS756676536 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Inborn genetic diseases, SLC19A3-related disorder
RS759807393 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS763130915 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS764867524 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS773705000 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS780569649 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Inborn genetic diseases, Biotin-responsive basal ganglia disease
RS863224203 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS886044447 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS980641322 Health Risk Conflicting classifications of pathogenicity Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS1085307963 Health Risk Likely pathogenic
RS1131691902 Health Risk Likely pathogenic
RS1203259286 Health Risk Likely pathogenic Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS1209312070 Health Risk Likely pathogenic Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS121917884 Health Risk Likely pathogenic Biotin-responsive basal ganglia disease, Inborn genetic diseases, Thiamine metabolism dysfunction syndrome 2 (biotin/thiamine-responsive basal ganglia disease type)
RS2470552983 Health Risk Likely pathogenic Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS2470553060 Health Risk Likely pathogenic Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS2470581081 Health Risk Likely pathogenic Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
RS531876613 Health Risk Likely pathogenic Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
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