SLC19A3 Chromosome 2
Solute carrier family 19 member 3
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What This Gene Does
This gene encodes a ubiquitously expressed transmembrane thiamine transporter that lacks folate transport activity. Mutations in this gene cause biotin-responsive basal ganglia disease (BBGD); a recessive disorder manifested in childhood that progresses to chronic encephalopathy, dystonia, quadriparesis, and death if untreated. Patients with BBGD have bilateral necrosis in the head of the caudate nucleus and in the putamen. Administration of high doses of biotin in the early progression of the disorder eliminates pathological symptoms while delayed treatment results in residual paraparesis, mild cognitive disability, or dystonia. Administration of thiamine is ineffective in the treatment of this disorder. Experiments have failed to show that this protein can transport biotin. Mutations in this gene also cause a Wernicke's-like encephalopathy.[provided by RefSeq, Jan 2010]
Gene Info
Gene Group
Solute carrier family 19
Locus Type
gene with protein product
Location
2q36.3
Ensembl
ENSG00000135917
Associated Conditions (5)
Biotin-responsive basal ganglia disease
Inborn genetic diseases
SLC19A3-related disorder
Intellectual disability
Thiamine metabolism dysfunction syndrome 2 (biotin/thiamine-responsive basal ganglia disease type)
Key Variants
RS1064795112
Conflicting classifications of pathogenicity
Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
Health Risk
RS1131691615
Conflicting classifications of pathogenicity
Health Risk
RS116533505
Conflicting classifications of pathogenicity
Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
Health Risk
RS1233252115
Conflicting classifications of pathogenicity
Biotin-responsive basal ganglia disease, Inborn genetic diseases, Biotin-responsive basal ganglia disease
Health Risk
RS138363524
Conflicting classifications of pathogenicity
Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
Health Risk
RS138839321
Conflicting classifications of pathogenicity
Biotin-responsive basal ganglia disease, Inborn genetic diseases, Biotin-responsive basal ganglia disease
Health Risk
RS141957107
Conflicting classifications of pathogenicity
Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
Health Risk
RS142166552
Conflicting classifications of pathogenicity
Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
Health Risk
RS145288025
Conflicting classifications of pathogenicity
Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease
Health Risk
RS145804755
Conflicting classifications of pathogenicity
Biotin-responsive basal ganglia disease, SLC19A3-related disorder, Biotin-responsive basal ganglia disease
Health Risk
RS146949876
Conflicting classifications of pathogenicity
Biotin-responsive basal ganglia disease, Inborn genetic diseases, Biotin-responsive basal ganglia disease
Health Risk
RS147205930
Conflicting classifications of pathogenicity
Biotin-responsive basal ganglia disease, SLC19A3-related disorder, Biotin-responsive basal ganglia disease
Health Risk
All Variants (101)
| RSID | Category | Clinical Significance | Conditions |
|---|---|---|---|
| RS1064795112 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS1131691615 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS116533505 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS1233252115 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Inborn genetic diseases, Biotin-responsive basal ganglia disease |
| RS138363524 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS138839321 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Inborn genetic diseases, Biotin-responsive basal ganglia disease |
| RS141957107 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS142166552 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS145288025 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS145804755 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, SLC19A3-related disorder, Biotin-responsive basal ganglia disease |
| RS146949876 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Inborn genetic diseases, Biotin-responsive basal ganglia disease |
| RS147205930 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, SLC19A3-related disorder, Biotin-responsive basal ganglia disease |
| RS147502239 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, SLC19A3-related disorder, Biotin-responsive basal ganglia disease |
| RS149806390 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS150523975 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS1574560025 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS188532608 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS199558186 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Intellectual disability, Inborn genetic diseases |
| RS199970847 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS200971390 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS201274864 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS201544540 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS367737262 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Inborn genetic diseases, Biotin-responsive basal ganglia disease |
| RS368364131 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, SLC19A3-related disorder, Biotin-responsive basal ganglia disease |
| RS368717276 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Inborn genetic diseases, Biotin-responsive basal ganglia disease |
| RS372637185 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS375099581 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS376187918 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS563607795 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS566837952 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS746794574 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS754794859 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS756676536 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Inborn genetic diseases, SLC19A3-related disorder |
| RS759807393 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS763130915 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS764867524 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS773705000 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS780569649 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Inborn genetic diseases, Biotin-responsive basal ganglia disease |
| RS863224203 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS886044447 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS980641322 | Health Risk | Conflicting classifications of pathogenicity | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS1085307963 | Health Risk | Likely pathogenic | — |
| RS1131691902 | Health Risk | Likely pathogenic | — |
| RS1203259286 | Health Risk | Likely pathogenic | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS1209312070 | Health Risk | Likely pathogenic | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS121917884 | Health Risk | Likely pathogenic | Biotin-responsive basal ganglia disease, Inborn genetic diseases, Thiamine metabolism dysfunction syndrome 2 (biotin/thiamine-responsive basal ganglia disease type) |
| RS2470552983 | Health Risk | Likely pathogenic | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS2470553060 | Health Risk | Likely pathogenic | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS2470581081 | Health Risk | Likely pathogenic | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |
| RS531876613 | Health Risk | Likely pathogenic | Biotin-responsive basal ganglia disease, Biotin-responsive basal ganglia disease |