SHH Chromosome 7

Sonic hedgehog signaling molecule
84 variants 84 Health Risk

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What This Gene Does
This gene encodes a protein that is instrumental in patterning the early embryo. It has been implicated as the key inductive signal in patterning of the ventral neural tube, the anterior-posterior limb axis, and the ventral somites. Of three human proteins showing sequence and functional similarity to the sonic hedgehog protein of Drosophila, this protein is the most similar. The protein is made as a precursor that is autocatalytically cleaved; the N-terminal portion is soluble and contains the signalling activity while the C-terminal portion is involved in precursor processing. More importantly, the C-terminal product covalently attaches a cholesterol moiety to the N-terminal product, restricting the N-terminal product to the cell surface and preventing it from freely diffusing throughout the developing embryo. Defects in this protein or in its signalling pathway are a cause of holoprosencephaly (HPE), a disorder in which the developing forebrain fails to correctly separate into right and left hemispheres. HPE is manifested by facial deformities. It is also thought that mutations in this gene or in its signalling pathway may be responsible for VACTERL syndrome, which is characterized by vertebral defects, anal atresia, tracheoesophageal fistula with esophageal atresia, radial and renal dysplasia, cardiac anomalies, and limb abnormalities. Additionally, mutations in a long range enhancer located approximately 1 megabase upstream of this gene disrupt limb patterning and can result in preaxial polydactyly. [provided by RefSeq, Jul 2008]
Gene Info
Gene Group
Hedgehog signaling molecule family
Locus Type
gene with protein product
Location
7q36.3
Ensembl
ENSG00000164690
Associated Conditions (15)
Holoprosencephaly 3
Neurodevelopmental disorder with dysmorphic facies and distal limb anomalies
Inborn genetic diseases
SHH-related disorder
Solitary median maxillary central incisor syndrome
Microphthalmia
isolated
with coloboma 5
Autism
Schizencephaly
See cases
Septo-optic dysplasia sequence
Developmental and epileptic encephalopathy
11
Partial agenesis of the corpus callosum
Key Variants
All Variants (84)
RSID Category Clinical Significance Conditions
RS1008384764 Health Risk Conflicting classifications of pathogenicity
RS104894043 Health Risk Conflicting classifications of pathogenicity Holoprosencephaly 3, Neurodevelopmental disorder with dysmorphic facies and distal limb anomalies, Holoprosencephaly 3
RS1057518056 Health Risk Conflicting classifications of pathogenicity Holoprosencephaly 3, Holoprosencephaly 3
RS112055654 Health Risk Conflicting classifications of pathogenicity Holoprosencephaly 3, Holoprosencephaly 3
RS191903572 Health Risk Conflicting classifications of pathogenicity Holoprosencephaly 3, Inborn genetic diseases, Holoprosencephaly 3
RS2117126655 Health Risk Conflicting classifications of pathogenicity Holoprosencephaly 3, Holoprosencephaly 3
RS2535892114 Health Risk Conflicting classifications of pathogenicity Holoprosencephaly 3, Holoprosencephaly 3
RS2535892639 Health Risk Conflicting classifications of pathogenicity Holoprosencephaly 3, Holoprosencephaly 3
RS2535894330 Health Risk Conflicting classifications of pathogenicity Holoprosencephaly 3, Holoprosencephaly 3
RS2535894379 Health Risk Conflicting classifications of pathogenicity SHH-related disorder, Solitary median maxillary central incisor syndrome, SHH-related disorder
RS2535901228 Health Risk Conflicting classifications of pathogenicity Holoprosencephaly 3, Holoprosencephaly 3
RS551809680 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Holoprosencephaly 3, SHH-related disorder
RS552960040 Health Risk Conflicting classifications of pathogenicity Holoprosencephaly 3, Holoprosencephaly 3
RS752650571 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Solitary median maxillary central incisor syndrome, Inborn genetic diseases
RS754480431 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, SHH-related disorder, Inborn genetic diseases
RS769920627 Health Risk Conflicting classifications of pathogenicity SHH-related disorder, SHH-related disorder
RS779670631 Health Risk Conflicting classifications of pathogenicity Holoprosencephaly 3, Holoprosencephaly 3
RS104894052 Health Risk Likely pathogenic Solitary median maxillary central incisor syndrome, Solitary median maxillary central incisor syndrome
RS1085307689 Health Risk Likely pathogenic
RS1131691966 Health Risk Likely pathogenic
RS1131691989 Health Risk Likely pathogenic Solitary median maxillary central incisor syndrome, SHH-related disorder, Solitary median maxillary central incisor syndrome
RS1420292012 Health Risk Likely pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS1554493722 Health Risk Likely pathogenic
RS1554495331 Health Risk Likely pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS1584805934 Health Risk Likely pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS2117124779 Health Risk Likely pathogenic
RS2117124880 Health Risk Likely pathogenic
RS2117124904 Health Risk Likely pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS2117125420 Health Risk Likely pathogenic
RS2117128026 Health Risk Likely pathogenic
RS2117128881 Health Risk Likely pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS2117151246 Health Risk Likely pathogenic
RS2535893849 Health Risk Likely pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS2535893958 Health Risk Likely pathogenic Holoprosencephaly 3, Solitary median maxillary central incisor syndrome, Holoprosencephaly 3
RS2535894151 Health Risk Likely pathogenic
RS2535901206 Health Risk Likely pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS587778799 Health Risk Likely pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS587778805 Health Risk Likely pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS587778806 Health Risk Likely pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS753315599 Health Risk Likely pathogenic Microphthalmia, isolated, with coloboma 5
RS777486607 Health Risk Likely pathogenic Autism, Autism
RS866005910 Health Risk Likely pathogenic
RS104894040 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3, Holoprosencephaly 3
RS104894042 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS104894044 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS104894045 Health Risk Pathogenic Holoprosencephaly 3, Inborn genetic diseases, Holoprosencephaly 3
RS104894046 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS104894048 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS104894049 Health Risk Pathogenic Solitary median maxillary central incisor syndrome, Solitary median maxillary central incisor syndrome
RS104894050 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
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