SHH Chromosome 7
Sonic hedgehog signaling molecule
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What This Gene Does
This gene encodes a protein that is instrumental in patterning the early embryo. It has been implicated as the key inductive signal in patterning of the ventral neural tube, the anterior-posterior limb axis, and the ventral somites. Of three human proteins showing sequence and functional similarity to the sonic hedgehog protein of Drosophila, this protein is the most similar. The protein is made as a precursor that is autocatalytically cleaved; the N-terminal portion is soluble and contains the signalling activity while the C-terminal portion is involved in precursor processing. More importantly, the C-terminal product covalently attaches a cholesterol moiety to the N-terminal product, restricting the N-terminal product to the cell surface and preventing it from freely diffusing throughout the developing embryo. Defects in this protein or in its signalling pathway are a cause of holoprosencephaly (HPE), a disorder in which the developing forebrain fails to correctly separate into right and left hemispheres. HPE is manifested by facial deformities. It is also thought that mutations in this gene or in its signalling pathway may be responsible for VACTERL syndrome, which is characterized by vertebral defects, anal atresia, tracheoesophageal fistula with esophageal atresia, radial and renal dysplasia, cardiac anomalies, and limb abnormalities. Additionally, mutations in a long range enhancer located approximately 1 megabase upstream of this gene disrupt limb patterning and can result in preaxial polydactyly. [provided by RefSeq, Jul 2008]
Gene Info
Gene Group
Hedgehog signaling molecule family
Locus Type
gene with protein product
Location
7q36.3
Ensembl
ENSG00000164690
Associated Conditions (15)
Holoprosencephaly 3
Neurodevelopmental disorder with dysmorphic facies and distal limb anomalies
Inborn genetic diseases
SHH-related disorder
Solitary median maxillary central incisor syndrome
Microphthalmia
isolated
with coloboma 5
Autism
Schizencephaly
See cases
Septo-optic dysplasia sequence
Developmental and epileptic encephalopathy
11
Partial agenesis of the corpus callosum
Key Variants
RS1008384764
Conflicting classifications of pathogenicity
Health Risk
RS104894043
Conflicting classifications of pathogenicity
Holoprosencephaly 3, Neurodevelopmental disorder with dysmorphic facies and distal limb anomalies, Holoprosencephaly 3
Health Risk
RS1057518056
Conflicting classifications of pathogenicity
Holoprosencephaly 3, Holoprosencephaly 3
Health Risk
RS112055654
Conflicting classifications of pathogenicity
Holoprosencephaly 3, Holoprosencephaly 3
Health Risk
RS191903572
Conflicting classifications of pathogenicity
Holoprosencephaly 3, Inborn genetic diseases, Holoprosencephaly 3
Health Risk
RS2117126655
Conflicting classifications of pathogenicity
Holoprosencephaly 3, Holoprosencephaly 3
Health Risk
RS2535892114
Conflicting classifications of pathogenicity
Holoprosencephaly 3, Holoprosencephaly 3
Health Risk
RS2535892639
Conflicting classifications of pathogenicity
Holoprosencephaly 3, Holoprosencephaly 3
Health Risk
RS2535894330
Conflicting classifications of pathogenicity
Holoprosencephaly 3, Holoprosencephaly 3
Health Risk
RS2535894379
Conflicting classifications of pathogenicity
SHH-related disorder, Solitary median maxillary central incisor syndrome, SHH-related disorder
Health Risk
RS2535901228
Conflicting classifications of pathogenicity
Holoprosencephaly 3, Holoprosencephaly 3
Health Risk
RS551809680
Conflicting classifications of pathogenicity
Inborn genetic diseases, Holoprosencephaly 3, SHH-related disorder
Health Risk
All Variants (84)
| RSID | Category | Clinical Significance | Conditions |
|---|---|---|---|
| RS1008384764 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS104894043 | Health Risk | Conflicting classifications of pathogenicity | Holoprosencephaly 3, Neurodevelopmental disorder with dysmorphic facies and distal limb anomalies, Holoprosencephaly 3 |
| RS1057518056 | Health Risk | Conflicting classifications of pathogenicity | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS112055654 | Health Risk | Conflicting classifications of pathogenicity | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS191903572 | Health Risk | Conflicting classifications of pathogenicity | Holoprosencephaly 3, Inborn genetic diseases, Holoprosencephaly 3 |
| RS2117126655 | Health Risk | Conflicting classifications of pathogenicity | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS2535892114 | Health Risk | Conflicting classifications of pathogenicity | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS2535892639 | Health Risk | Conflicting classifications of pathogenicity | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS2535894330 | Health Risk | Conflicting classifications of pathogenicity | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS2535894379 | Health Risk | Conflicting classifications of pathogenicity | SHH-related disorder, Solitary median maxillary central incisor syndrome, SHH-related disorder |
| RS2535901228 | Health Risk | Conflicting classifications of pathogenicity | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS551809680 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, Holoprosencephaly 3, SHH-related disorder |
| RS552960040 | Health Risk | Conflicting classifications of pathogenicity | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS752650571 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, Solitary median maxillary central incisor syndrome, Inborn genetic diseases |
| RS754480431 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, SHH-related disorder, Inborn genetic diseases |
| RS769920627 | Health Risk | Conflicting classifications of pathogenicity | SHH-related disorder, SHH-related disorder |
| RS779670631 | Health Risk | Conflicting classifications of pathogenicity | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS104894052 | Health Risk | Likely pathogenic | Solitary median maxillary central incisor syndrome, Solitary median maxillary central incisor syndrome |
| RS1085307689 | Health Risk | Likely pathogenic | — |
| RS1131691966 | Health Risk | Likely pathogenic | — |
| RS1131691989 | Health Risk | Likely pathogenic | Solitary median maxillary central incisor syndrome, SHH-related disorder, Solitary median maxillary central incisor syndrome |
| RS1420292012 | Health Risk | Likely pathogenic | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS1554493722 | Health Risk | Likely pathogenic | — |
| RS1554495331 | Health Risk | Likely pathogenic | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS1584805934 | Health Risk | Likely pathogenic | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS2117124779 | Health Risk | Likely pathogenic | — |
| RS2117124880 | Health Risk | Likely pathogenic | — |
| RS2117124904 | Health Risk | Likely pathogenic | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS2117125420 | Health Risk | Likely pathogenic | — |
| RS2117128026 | Health Risk | Likely pathogenic | — |
| RS2117128881 | Health Risk | Likely pathogenic | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS2117151246 | Health Risk | Likely pathogenic | — |
| RS2535893849 | Health Risk | Likely pathogenic | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS2535893958 | Health Risk | Likely pathogenic | Holoprosencephaly 3, Solitary median maxillary central incisor syndrome, Holoprosencephaly 3 |
| RS2535894151 | Health Risk | Likely pathogenic | — |
| RS2535901206 | Health Risk | Likely pathogenic | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS587778799 | Health Risk | Likely pathogenic | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS587778805 | Health Risk | Likely pathogenic | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS587778806 | Health Risk | Likely pathogenic | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS753315599 | Health Risk | Likely pathogenic | Microphthalmia, isolated, with coloboma 5 |
| RS777486607 | Health Risk | Likely pathogenic | Autism, Autism |
| RS866005910 | Health Risk | Likely pathogenic | — |
| RS104894040 | Health Risk | Pathogenic | Holoprosencephaly 3, Holoprosencephaly 3, Holoprosencephaly 3 |
| RS104894042 | Health Risk | Pathogenic | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS104894044 | Health Risk | Pathogenic | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS104894045 | Health Risk | Pathogenic | Holoprosencephaly 3, Inborn genetic diseases, Holoprosencephaly 3 |
| RS104894046 | Health Risk | Pathogenic | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS104894048 | Health Risk | Pathogenic | Holoprosencephaly 3, Holoprosencephaly 3 |
| RS104894049 | Health Risk | Pathogenic | Solitary median maxillary central incisor syndrome, Solitary median maxillary central incisor syndrome |
| RS104894050 | Health Risk | Pathogenic | Holoprosencephaly 3, Holoprosencephaly 3 |