SHH Chromosome 7

Sonic hedgehog signaling molecule
84 variants 84 Health Risk

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What This Gene Does
This gene encodes a protein that is instrumental in patterning the early embryo. It has been implicated as the key inductive signal in patterning of the ventral neural tube, the anterior-posterior limb axis, and the ventral somites. Of three human proteins showing sequence and functional similarity to the sonic hedgehog protein of Drosophila, this protein is the most similar. The protein is made as a precursor that is autocatalytically cleaved; the N-terminal portion is soluble and contains the signalling activity while the C-terminal portion is involved in precursor processing. More importantly, the C-terminal product covalently attaches a cholesterol moiety to the N-terminal product, restricting the N-terminal product to the cell surface and preventing it from freely diffusing throughout the developing embryo. Defects in this protein or in its signalling pathway are a cause of holoprosencephaly (HPE), a disorder in which the developing forebrain fails to correctly separate into right and left hemispheres. HPE is manifested by facial deformities. It is also thought that mutations in this gene or in its signalling pathway may be responsible for VACTERL syndrome, which is characterized by vertebral defects, anal atresia, tracheoesophageal fistula with esophageal atresia, radial and renal dysplasia, cardiac anomalies, and limb abnormalities. Additionally, mutations in a long range enhancer located approximately 1 megabase upstream of this gene disrupt limb patterning and can result in preaxial polydactyly. [provided by RefSeq, Jul 2008]
Gene Info
Gene Group
Hedgehog signaling molecule family
Locus Type
gene with protein product
Location
7q36.3
Ensembl
ENSG00000164690
Associated Conditions (15)
Holoprosencephaly 3
Neurodevelopmental disorder with dysmorphic facies and distal limb anomalies
Inborn genetic diseases
SHH-related disorder
Solitary median maxillary central incisor syndrome
Microphthalmia
isolated
with coloboma 5
Autism
Schizencephaly
See cases
Septo-optic dysplasia sequence
Developmental and epileptic encephalopathy
11
Partial agenesis of the corpus callosum
Key Variants
All Variants (84)
RSID Category Clinical Significance Conditions
RS104894051 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS104894053 Health Risk Pathogenic Holoprosencephaly 3, Solitary median maxillary central incisor syndrome, Holoprosencephaly 3
RS1057518660 Health Risk Pathogenic Holoprosencephaly 3, SHH-related disorder, Holoprosencephaly 3
RS1159911756 Health Risk Pathogenic
RS146990376 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS1554493633 Health Risk Pathogenic
RS1554493810 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS1563198990 Health Risk Pathogenic
RS1584800601 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS1584800607 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS1584806077 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS1803239521 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS1803267843 Health Risk Pathogenic Schizencephaly, Schizencephaly
RS1803360739 Health Risk Pathogenic
RS2535891336 Health Risk Pathogenic See cases, See cases
RS2535891899 Health Risk Pathogenic See cases, See cases
RS2535894339 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS2535900806 Health Risk Pathogenic Septo-optic dysplasia sequence, Septo-optic dysplasia sequence
RS2535910513 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS267607047 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS28936675 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS397515375 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS397515376 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS587778786 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS587778788 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS587778789 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS587778792 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS587778803 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS760920236 Health Risk Pathogenic Schizencephaly, Schizencephaly
RS763132615 Health Risk Pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS779093031 Health Risk Pathogenic Holoprosencephaly 3, Developmental and epileptic encephalopathy, 11
RS868096125 Health Risk Pathogenic Partial agenesis of the corpus callosum, Partial agenesis of the corpus callosum
RS1554493607 Health Risk Pathogenic/Likely pathogenic Holoprosencephaly 3, Holoprosencephaly 3
RS886042458 Health Risk Pathogenic/Likely pathogenic Holoprosencephaly 3, Holoprosencephaly 3, SHH-related disorder
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