NPC1 Chromosome 18

NPC intracellular cholesterol transporter 1
654 variants 654 Health Risk

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What This Gene Does
This gene encodes a large protein that resides in the limiting membrane of endosomes and lysosomes and mediates intracellular cholesterol trafficking via binding of cholesterol to its N-terminal domain. It is predicted to have a cytoplasmic C-terminus, 13 transmembrane domains, and 3 large loops in the lumen of the endosome - the last loop being at the N-terminus. This protein transports low-density lipoproteins to late endosomal/lysosomal compartments where they are hydrolized and released as free cholesterol. Defects in this gene cause Niemann-Pick type C disease, a rare autosomal recessive neurodegenerative disorder characterized by over accumulation of cholesterol and glycosphingolipids in late endosomal/lysosomal compartments.[provided by RefSeq, Aug 2009]
Gene Info
Gene Group
Solute carrier family 65
Locus Type
gene with protein product
Location
18q11.2
Ensembl
ENSG00000141458
Associated Conditions (23)
Niemann-Pick disease
type C1
type C
Sphingomyelin/cholesterol lipidosis
NPC1-related disorder
Inborn genetic diseases
Dystonic disorder
Melanoma
Malignant tumor of esophagus
Papillary renal cell carcinoma type 1
Familial cancer of breast
Uterine corpus endometrial carcinoma
Russell-Silver syndrome
Nasopharyngeal carcinoma
juvenile form
Ovarian serous cystadenocarcinoma
Abnormality of metabolism/homeostasis
adult form
6 conditions
type C2
+3 more conditions
Key Variants
All Variants (654)
RSID Category Clinical Significance Conditions
RS1046046139 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS1053321823 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, type C
RS1057517077 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS1057519229 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS1064793791 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS111256741 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS112387560 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS113371321 Health Risk Conflicting classifications of pathogenicity Dystonic disorder, Niemann-Pick disease, type C1
RS1192824648 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS120074132 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS1208252513 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Inborn genetic diseases
RS1234099104 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS1241975606 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS1243863645 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, type C
RS1273070261 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS1338658857 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS1364834942 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS1376430791 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS1380492295 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS138079168 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS138184115 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Inborn genetic diseases
RS141440861 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS1415921261 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS141659629 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS141892620 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Inborn genetic diseases
RS143797098 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS144415945 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Inborn genetic diseases
RS145101354 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Inborn genetic diseases
RS145145840 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Inborn genetic diseases
RS145227129 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS145236115 Health Risk Conflicting classifications of pathogenicity
RS145297180 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Inborn genetic diseases
RS145362908 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS145666943 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS146105340 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS146874573 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS147021046 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS147419225 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS147795644 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS148078801 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS150334966 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS150602021 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS151125564 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Inborn genetic diseases
RS1555634618 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS1555634676 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS1555636685 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS1555638882 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS1567945743 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS1567949544 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS1567951608 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
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