NPC1 Chromosome 18
NPC intracellular cholesterol transporter 1
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What This Gene Does
This gene encodes a large protein that resides in the limiting membrane of endosomes and lysosomes and mediates intracellular cholesterol trafficking via binding of cholesterol to its N-terminal domain. It is predicted to have a cytoplasmic C-terminus, 13 transmembrane domains, and 3 large loops in the lumen of the endosome - the last loop being at the N-terminus. This protein transports low-density lipoproteins to late endosomal/lysosomal compartments where they are hydrolized and released as free cholesterol. Defects in this gene cause Niemann-Pick type C disease, a rare autosomal recessive neurodegenerative disorder characterized by over accumulation of cholesterol and glycosphingolipids in late endosomal/lysosomal compartments.[provided by RefSeq, Aug 2009]
Gene Info
Gene Group
Solute carrier family 65
Locus Type
gene with protein product
Location
18q11.2
Ensembl
ENSG00000141458
Associated Conditions (23)
Niemann-Pick disease
type C1
type C
Sphingomyelin/cholesterol lipidosis
NPC1-related disorder
Inborn genetic diseases
Dystonic disorder
Melanoma
Malignant tumor of esophagus
Papillary renal cell carcinoma type 1
Familial cancer of breast
Uterine corpus endometrial carcinoma
Russell-Silver syndrome
Nasopharyngeal carcinoma
juvenile form
Ovarian serous cystadenocarcinoma
Abnormality of metabolism/homeostasis
adult form
6 conditions
type C2
+3 more conditions
Key Variants
RS1046046139
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Niemann-Pick disease
Health Risk
RS1053321823
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, type C
Health Risk
RS1057517077
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Niemann-Pick disease
Health Risk
RS1057519229
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Niemann-Pick disease
Health Risk
RS1064793791
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Niemann-Pick disease
Health Risk
RS111256741
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, NPC1-related disorder
Health Risk
RS112387560
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, NPC1-related disorder
Health Risk
RS113371321
Conflicting classifications of pathogenicity
Dystonic disorder, Niemann-Pick disease, type C1
Health Risk
RS1192824648
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Niemann-Pick disease
Health Risk
RS120074132
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Niemann-Pick disease
Health Risk
RS1208252513
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Inborn genetic diseases
Health Risk
RS1234099104
Conflicting classifications of pathogenicity
Niemann-Pick disease, type C1, Niemann-Pick disease
Health Risk
All Variants (654)
| RSID | Category | Clinical Significance | Conditions |
|---|---|---|---|
| RS1567963883 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS1567965313 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS1621962 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS182413311 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Malignant tumor of esophagus |
| RS183935795 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS190298665 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS191526202 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS201118975 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Inborn genetic diseases |
| RS201170241 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS201460899 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Inborn genetic diseases |
| RS201791992 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS201956601 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS202046984 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS2058949363 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS2511183411 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS2511197050 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, NPC1-related disorder, Niemann-Pick disease |
| RS2511213296 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS28942104 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, type C |
| RS28942105 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, type C |
| RS34084984 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS34226296 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS34624018 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Inborn genetic diseases |
| RS367654655 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Inborn genetic diseases |
| RS369985476 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS370382673 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS370718676 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS371076898 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS371122321 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS371160947 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS372947142 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, type C |
| RS373274825 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS373435883 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS373517774 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Inborn genetic diseases |
| RS374571310 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Inborn genetic diseases |
| RS375307057 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Inborn genetic diseases |
| RS375797728 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS376210355 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS376980859 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS377130051 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C, type C1 |
| RS483352891 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS534280005 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C, type C1 |
| RS548191894 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, type C |
| RS556117842 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS55680026 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Inborn genetic diseases |
| RS55724504 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Inborn genetic diseases |
| RS558452690 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS560122245 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |
| RS568769965 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, NPC1-related disorder |
| RS572499557 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Inborn genetic diseases |
| RS66620415 | Health Risk | Conflicting classifications of pathogenicity | Niemann-Pick disease, type C1, Niemann-Pick disease |