NPC1 Chromosome 18

NPC intracellular cholesterol transporter 1
654 variants 654 Health Risk

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What This Gene Does
This gene encodes a large protein that resides in the limiting membrane of endosomes and lysosomes and mediates intracellular cholesterol trafficking via binding of cholesterol to its N-terminal domain. It is predicted to have a cytoplasmic C-terminus, 13 transmembrane domains, and 3 large loops in the lumen of the endosome - the last loop being at the N-terminus. This protein transports low-density lipoproteins to late endosomal/lysosomal compartments where they are hydrolized and released as free cholesterol. Defects in this gene cause Niemann-Pick type C disease, a rare autosomal recessive neurodegenerative disorder characterized by over accumulation of cholesterol and glycosphingolipids in late endosomal/lysosomal compartments.[provided by RefSeq, Aug 2009]
Gene Info
Gene Group
Solute carrier family 65
Locus Type
gene with protein product
Location
18q11.2
Ensembl
ENSG00000141458
Associated Conditions (23)
Niemann-Pick disease
type C1
type C
Sphingomyelin/cholesterol lipidosis
NPC1-related disorder
Inborn genetic diseases
Dystonic disorder
Melanoma
Malignant tumor of esophagus
Papillary renal cell carcinoma type 1
Familial cancer of breast
Uterine corpus endometrial carcinoma
Russell-Silver syndrome
Nasopharyngeal carcinoma
juvenile form
Ovarian serous cystadenocarcinoma
Abnormality of metabolism/homeostasis
adult form
6 conditions
type C2
+3 more conditions
Key Variants
All Variants (654)
RSID Category Clinical Significance Conditions
RS1567963883 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS1567965313 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS1621962 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS182413311 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Malignant tumor of esophagus
RS183935795 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS190298665 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS191526202 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS201118975 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Inborn genetic diseases
RS201170241 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS201460899 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Inborn genetic diseases
RS201791992 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS201956601 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS202046984 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS2058949363 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS2511183411 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS2511197050 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, NPC1-related disorder, Niemann-Pick disease
RS2511213296 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS28942104 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, type C
RS28942105 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, type C
RS34084984 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS34226296 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS34624018 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Inborn genetic diseases
RS367654655 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Inborn genetic diseases
RS369985476 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS370382673 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS370718676 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS371076898 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS371122321 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS371160947 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS372947142 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, type C
RS373274825 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS373435883 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS373517774 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Inborn genetic diseases
RS374571310 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Inborn genetic diseases
RS375307057 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Inborn genetic diseases
RS375797728 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS376210355 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS376980859 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS377130051 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C, type C1
RS483352891 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS534280005 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C, type C1
RS548191894 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, type C
RS556117842 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS55680026 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Inborn genetic diseases
RS55724504 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Inborn genetic diseases
RS558452690 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS560122245 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
RS568769965 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, NPC1-related disorder
RS572499557 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Inborn genetic diseases
RS66620415 Health Risk Conflicting classifications of pathogenicity Niemann-Pick disease, type C1, Niemann-Pick disease
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