IKZF1 Chromosome 7
IKAROS family zinc finger 1
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What This Gene Does
This gene encodes a transcription factor that belongs to the family of zinc-finger DNA-binding proteins associated with chromatin remodeling. The expression of this protein is restricted to the fetal and adult hemo-lymphopoietic system, and it functions as a regulator of lymphocyte differentiation. Several alternatively spliced transcript variants encoding different isoforms have been described for this gene. Most isoforms share a common C-terminal domain, which contains two zinc finger motifs that are required for hetero- or homo-dimerization, and for interactions with other proteins. The isoforms, however, differ in the number of N-terminal zinc finger motifs that bind DNA and in nuclear localization signal presence, resulting in members with and without DNA-binding properties. Only a few isoforms contain the requisite three or more N-terminal zinc motifs that confer high affinity binding to a specific core DNA sequence element in the promoters of target genes. The non-DNA-binding isoforms are largely found in the cytoplasm, and are thought to function as dominant-negative factors. Overexpression of some dominant-negative isoforms have been associated with B-cell malignancies, such as acute lymphoblastic leukemia (ALL). [provided by RefSeq, May 2014]
Gene Info
Gene Group
"Zinc fingers C2H2-type|Protein phosphatase 1 regulatory subunits"
Locus Type
gene with protein product
Location
7p12.2
Ensembl
ENSG00000185811
Associated Conditions (9)
Leukemia
acute lymphocytic
susceptibility to
2
Pancytopenia due to IKZF1 mutations
IKZF1-related disorder
Inherited Immunodeficiency Diseases
Acute lymphoid leukemia
Immunodeficiency
Key Variants
RS11978267
association
Leukemia, acute lymphocytic, susceptibility to
Health Risk
RS4132601
association
Leukemia, acute lymphocytic, susceptibility to
Health Risk
RS1064796324
Conflicting classifications of pathogenicity
Pancytopenia due to IKZF1 mutations, IKZF1-related disorder, Pancytopenia due to IKZF1 mutations
Health Risk
RS1131690788
Conflicting classifications of pathogenicity
Pancytopenia due to IKZF1 mutations, Pancytopenia due to IKZF1 mutations
Health Risk
RS1245618829
Conflicting classifications of pathogenicity
Pancytopenia due to IKZF1 mutations, Pancytopenia due to IKZF1 mutations
Health Risk
RS144637662
Conflicting classifications of pathogenicity
Health Risk
RS150385329
Conflicting classifications of pathogenicity
Health Risk
RS1584925614
Conflicting classifications of pathogenicity
Inherited Immunodeficiency Diseases, Inherited Immunodeficiency Diseases
Health Risk
RS1584926038
Conflicting classifications of pathogenicity
Inherited Immunodeficiency Diseases, Inherited Immunodeficiency Diseases
Health Risk
RS1812147849
Conflicting classifications of pathogenicity
Health Risk
RS1812172495
Conflicting classifications of pathogenicity
Pancytopenia due to IKZF1 mutations, Pancytopenia due to IKZF1 mutations
Health Risk
RS2153477674
Conflicting classifications of pathogenicity
Pancytopenia due to IKZF1 mutations, Pancytopenia due to IKZF1 mutations
Health Risk
All Variants (35)
| RSID | Category | Clinical Significance | Conditions |
|---|---|---|---|
| RS11978267 | Health Risk | association | Leukemia, acute lymphocytic, susceptibility to |
| RS4132601 | Health Risk | association | Leukemia, acute lymphocytic, susceptibility to |
| RS1064796324 | Health Risk | Conflicting classifications of pathogenicity | Pancytopenia due to IKZF1 mutations, IKZF1-related disorder, Pancytopenia due to IKZF1 mutations |
| RS1131690788 | Health Risk | Conflicting classifications of pathogenicity | Pancytopenia due to IKZF1 mutations, Pancytopenia due to IKZF1 mutations |
| RS1245618829 | Health Risk | Conflicting classifications of pathogenicity | Pancytopenia due to IKZF1 mutations, Pancytopenia due to IKZF1 mutations |
| RS144637662 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS150385329 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS1584925614 | Health Risk | Conflicting classifications of pathogenicity | Inherited Immunodeficiency Diseases, Inherited Immunodeficiency Diseases |
| RS1584926038 | Health Risk | Conflicting classifications of pathogenicity | Inherited Immunodeficiency Diseases, Inherited Immunodeficiency Diseases |
| RS1812147849 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS1812172495 | Health Risk | Conflicting classifications of pathogenicity | Pancytopenia due to IKZF1 mutations, Pancytopenia due to IKZF1 mutations |
| RS2153477674 | Health Risk | Conflicting classifications of pathogenicity | Pancytopenia due to IKZF1 mutations, Pancytopenia due to IKZF1 mutations |
| RS369417059 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS541802498 | Health Risk | Conflicting classifications of pathogenicity | Acute lymphoid leukemia, IKZF1-related disorder, Acute lymphoid leukemia |
| RS762538092 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS778820674 | Health Risk | Conflicting classifications of pathogenicity | Pancytopenia due to IKZF1 mutations, Pancytopenia due to IKZF1 mutations |
| RS869312884 | Health Risk | Conflicting classifications of pathogenicity | Pancytopenia due to IKZF1 mutations, Inherited Immunodeficiency Diseases, Pancytopenia due to IKZF1 mutations |
| RS1435621658 | Health Risk | Likely pathogenic | — |
| RS1554391793 | Health Risk | Likely pathogenic | — |
| RS1584926133 | Health Risk | Likely pathogenic | Inherited Immunodeficiency Diseases, Inherited Immunodeficiency Diseases |
| RS1585040113 | Health Risk | Likely pathogenic | Inherited Immunodeficiency Diseases, Inherited Immunodeficiency Diseases |
| RS1810390889 | Health Risk | Likely pathogenic | — |
| RS2153477560 | Health Risk | Likely pathogenic | Acute lymphoid leukemia, Acute lymphoid leukemia |
| RS2153477847 | Health Risk | Likely pathogenic | Pancytopenia due to IKZF1 mutations, Acute lymphoid leukemia, Pancytopenia due to IKZF1 mutations |
| RS2538096964 | Health Risk | Likely pathogenic | Acute lymphoid leukemia, Acute lymphoid leukemia |
| RS2538103428 | Health Risk | Likely pathogenic | Acute lymphoid leukemia, Acute lymphoid leukemia |
| RS2538277509 | Health Risk | Likely pathogenic | Acute lymphoid leukemia, Acute lymphoid leukemia |
| RS2538941518 | Health Risk | Likely pathogenic | Pancytopenia due to IKZF1 mutations, Pancytopenia due to IKZF1 mutations |
| RS757521297 | Health Risk | Likely pathogenic | — |
| RS772322516 | Health Risk | Likely pathogenic | Acute lymphoid leukemia, Acute lymphoid leukemia |
| RS2153469119 | Health Risk | Pathogenic | Acute lymphoid leukemia, Acute lymphoid leukemia |
| RS374333820 | Health Risk | Pathogenic | Inherited Immunodeficiency Diseases, Pancytopenia due to IKZF1 mutations, IKZF1-related disorder |
| RS530073586 | Health Risk | Pathogenic | Pancytopenia due to IKZF1 mutations, Pancytopenia due to IKZF1 mutations |
| RS770551610 | Health Risk | Pathogenic | Pancytopenia due to IKZF1 mutations, Pancytopenia due to IKZF1 mutations, Pancytopenia due to IKZF1 mutations |
| RS869312883 | Health Risk | Pathogenic | Pancytopenia due to IKZF1 mutations, Pancytopenia due to IKZF1 mutations |