CTCF Chromosome 16
CCCTC-binding factor
Upload your DNA to see your personal genotypes for variants in CTCF.
What This Gene Does
This gene is a member of the BORIS + CTCF gene family and encodes a transcriptional regulator protein with 11 highly conserved zinc finger (ZF) domains. This nuclear protein is able to use different combinations of the ZF domains to bind different DNA target sequences and proteins. Depending upon the context of the site, the protein can bind a histone acetyltransferase (HAT)-containing complex and function as a transcriptional activator or bind a histone deacetylase (HDAC)-containing complex and function as a transcriptional repressor. If the protein is bound to a transcriptional insulator element, it can block communication between enhancers and upstream promoters, thereby regulating imprinted expression. Mutations in this gene have been associated with invasive breast cancers, prostate cancers, and Wilms' tumors. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2010]
Gene Info
Gene Group
"Zinc fingers C2H2-type|Cilia and flagella associated"
Locus Type
gene with protein product
Location
16q22.1
Ensembl
ENSG00000102974
Associated Conditions (10)
Inborn genetic diseases
CTCF-related neurodevelopmental disorder
CTCF-related disorder
Intellectual disability
Acute megakaryoblastic leukemia in down syndrome
Melanoma
See cases
Desmoplastic/nodular medulloblastoma
Alveolar rhabdomyosarcoma
CTCF-related syndromic intellectual disability
Key Variants
RS143508499
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS146712579
Conflicting classifications of pathogenicity
CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
Health Risk
RS148681672
Conflicting classifications of pathogenicity
Inborn genetic diseases, CTCF-related disorder, Inborn genetic diseases
Health Risk
RS1567610917
Conflicting classifications of pathogenicity
CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
Health Risk
RS1597718106
Conflicting classifications of pathogenicity
CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
Health Risk
RS201916739
Conflicting classifications of pathogenicity
Inborn genetic diseases, CTCF-related disorder, Inborn genetic diseases
Health Risk
RS2052068772
Conflicting classifications of pathogenicity
CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
Health Risk
RS2142839688
Conflicting classifications of pathogenicity
Health Risk
RS2142839733
Conflicting classifications of pathogenicity
CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
Health Risk
RS2142847418
Conflicting classifications of pathogenicity
CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
Health Risk
RS754444529
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS777402247
Conflicting classifications of pathogenicity
Inborn genetic diseases, CTCF-related disorder, Inborn genetic diseases
Health Risk
All Variants (76)
| RSID | Category | Clinical Significance | Conditions |
|---|---|---|---|
| RS143508499 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, Inborn genetic diseases |
| RS146712579 | Health Risk | Conflicting classifications of pathogenicity | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS148681672 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, CTCF-related disorder, Inborn genetic diseases |
| RS1567610917 | Health Risk | Conflicting classifications of pathogenicity | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS1597718106 | Health Risk | Conflicting classifications of pathogenicity | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS201916739 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, CTCF-related disorder, Inborn genetic diseases |
| RS2052068772 | Health Risk | Conflicting classifications of pathogenicity | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS2142839688 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS2142839733 | Health Risk | Conflicting classifications of pathogenicity | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS2142847418 | Health Risk | Conflicting classifications of pathogenicity | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS754444529 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, Inborn genetic diseases |
| RS777402247 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, CTCF-related disorder, Inborn genetic diseases |
| RS968244943 | Health Risk | Conflicting classifications of pathogenicity | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS1131691283 | Health Risk | Likely pathogenic | CTCF-related neurodevelopmental disorder, CTCF-related disorder, Inborn genetic diseases |
| RS1161257134 | Health Risk | Likely pathogenic | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS1406671449 | Health Risk | Likely pathogenic | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS1567609067 | Health Risk | Likely pathogenic | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS1597725291 | Health Risk | Likely pathogenic | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS2052056277 | Health Risk | Likely pathogenic | Intellectual disability, Intellectual disability |
| RS2052136913 | Health Risk | Likely pathogenic | CTCF-related disorder, CTCF-related neurodevelopmental disorder, CTCF-related disorder |
| RS2052137160 | Health Risk | Likely pathogenic | — |
| RS2052291685 | Health Risk | Likely pathogenic | Acute megakaryoblastic leukemia in down syndrome, Acute megakaryoblastic leukemia in down syndrome |
| RS2052320698 | Health Risk | Likely pathogenic | Acute megakaryoblastic leukemia in down syndrome, Acute megakaryoblastic leukemia in down syndrome |
| RS2142822830 | Health Risk | Likely pathogenic | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS2142827936 | Health Risk | Likely pathogenic | CTCF-related neurodevelopmental disorder, Melanoma, CTCF-related neurodevelopmental disorder |
| RS2142839315 | Health Risk | Likely pathogenic | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS2142839453 | Health Risk | Likely pathogenic | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS2142839619 | Health Risk | Likely pathogenic | — |
| RS2142847343 | Health Risk | Likely pathogenic | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS2142847350 | Health Risk | Likely pathogenic | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS2142849459 | Health Risk | Likely pathogenic | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS2142887156 | Health Risk | Likely pathogenic | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS2543448397 | Health Risk | Likely pathogenic | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS2543449850 | Health Risk | Likely pathogenic | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS2543451915 | Health Risk | Likely pathogenic | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS2543462726 | Health Risk | Likely pathogenic | — |
| RS2543470728 | Health Risk | Likely pathogenic | Inborn genetic diseases, Inborn genetic diseases |
| RS2543472599 | Health Risk | Likely pathogenic | Inborn genetic diseases, Inborn genetic diseases |
| RS750256116 | Health Risk | Likely pathogenic | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS771793540 | Health Risk | Likely pathogenic | — |
| RS776804939 | Health Risk | Likely pathogenic | CTCF-related disorder, CTCF-related disorder |
| RS886039600 | Health Risk | Likely pathogenic | — |
| RS1064796062 | Health Risk | Pathogenic | — |
| RS1259610303 | Health Risk | Pathogenic | CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder |
| RS1555534067 | Health Risk | Pathogenic | Inborn genetic diseases, Inborn genetic diseases |
| RS1555534093 | Health Risk | Pathogenic | — |
| RS1555534147 | Health Risk | Pathogenic | Inborn genetic diseases, CTCF-related neurodevelopmental disorder, Intellectual disability |
| RS1555535156 | Health Risk | Pathogenic | CTCF-related neurodevelopmental disorder, Inborn genetic diseases, CTCF-related neurodevelopmental disorder |
| RS1555535157 | Health Risk | Pathogenic | — |
| RS1555535739 | Health Risk | Pathogenic | Inborn genetic diseases, Inborn genetic diseases |