CTCF Chromosome 16

CCCTC-binding factor
76 variants 76 Health Risk

Upload your DNA to see your personal genotypes for variants in CTCF.

What This Gene Does
This gene is a member of the BORIS + CTCF gene family and encodes a transcriptional regulator protein with 11 highly conserved zinc finger (ZF) domains. This nuclear protein is able to use different combinations of the ZF domains to bind different DNA target sequences and proteins. Depending upon the context of the site, the protein can bind a histone acetyltransferase (HAT)-containing complex and function as a transcriptional activator or bind a histone deacetylase (HDAC)-containing complex and function as a transcriptional repressor. If the protein is bound to a transcriptional insulator element, it can block communication between enhancers and upstream promoters, thereby regulating imprinted expression. Mutations in this gene have been associated with invasive breast cancers, prostate cancers, and Wilms' tumors. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2010]
Gene Info
Gene Group
"Zinc fingers C2H2-type|Cilia and flagella associated"
Locus Type
gene with protein product
Location
16q22.1
Ensembl
ENSG00000102974
Associated Conditions (10)
Inborn genetic diseases
CTCF-related neurodevelopmental disorder
CTCF-related disorder
Intellectual disability
Acute megakaryoblastic leukemia in down syndrome
Melanoma
See cases
Desmoplastic/nodular medulloblastoma
Alveolar rhabdomyosarcoma
CTCF-related syndromic intellectual disability
Key Variants
RS143508499
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS146712579
Conflicting classifications of pathogenicity
CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
Health Risk
RS148681672
Conflicting classifications of pathogenicity
Inborn genetic diseases, CTCF-related disorder, Inborn genetic diseases
Health Risk
RS1567610917
Conflicting classifications of pathogenicity
CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
Health Risk
RS1597718106
Conflicting classifications of pathogenicity
CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
Health Risk
RS201916739
Conflicting classifications of pathogenicity
Inborn genetic diseases, CTCF-related disorder, Inborn genetic diseases
Health Risk
RS2052068772
Conflicting classifications of pathogenicity
CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
Health Risk
RS2142839688
Conflicting classifications of pathogenicity
Health Risk
RS2142839733
Conflicting classifications of pathogenicity
CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
Health Risk
RS2142847418
Conflicting classifications of pathogenicity
CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
Health Risk
RS754444529
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS777402247
Conflicting classifications of pathogenicity
Inborn genetic diseases, CTCF-related disorder, Inborn genetic diseases
Health Risk
All Variants (76)
RSID Category Clinical Significance Conditions
RS143508499 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS146712579 Health Risk Conflicting classifications of pathogenicity CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS148681672 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, CTCF-related disorder, Inborn genetic diseases
RS1567610917 Health Risk Conflicting classifications of pathogenicity CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS1597718106 Health Risk Conflicting classifications of pathogenicity CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS201916739 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, CTCF-related disorder, Inborn genetic diseases
RS2052068772 Health Risk Conflicting classifications of pathogenicity CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2142839688 Health Risk Conflicting classifications of pathogenicity
RS2142839733 Health Risk Conflicting classifications of pathogenicity CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2142847418 Health Risk Conflicting classifications of pathogenicity CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS754444529 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS777402247 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, CTCF-related disorder, Inborn genetic diseases
RS968244943 Health Risk Conflicting classifications of pathogenicity CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS1131691283 Health Risk Likely pathogenic CTCF-related neurodevelopmental disorder, CTCF-related disorder, Inborn genetic diseases
RS1161257134 Health Risk Likely pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS1406671449 Health Risk Likely pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS1567609067 Health Risk Likely pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS1597725291 Health Risk Likely pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2052056277 Health Risk Likely pathogenic Intellectual disability, Intellectual disability
RS2052136913 Health Risk Likely pathogenic CTCF-related disorder, CTCF-related neurodevelopmental disorder, CTCF-related disorder
RS2052137160 Health Risk Likely pathogenic
RS2052291685 Health Risk Likely pathogenic Acute megakaryoblastic leukemia in down syndrome, Acute megakaryoblastic leukemia in down syndrome
RS2052320698 Health Risk Likely pathogenic Acute megakaryoblastic leukemia in down syndrome, Acute megakaryoblastic leukemia in down syndrome
RS2142822830 Health Risk Likely pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2142827936 Health Risk Likely pathogenic CTCF-related neurodevelopmental disorder, Melanoma, CTCF-related neurodevelopmental disorder
RS2142839315 Health Risk Likely pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2142839453 Health Risk Likely pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2142839619 Health Risk Likely pathogenic
RS2142847343 Health Risk Likely pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2142847350 Health Risk Likely pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2142849459 Health Risk Likely pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2142887156 Health Risk Likely pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2543448397 Health Risk Likely pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2543449850 Health Risk Likely pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2543451915 Health Risk Likely pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2543462726 Health Risk Likely pathogenic
RS2543470728 Health Risk Likely pathogenic Inborn genetic diseases, Inborn genetic diseases
RS2543472599 Health Risk Likely pathogenic Inborn genetic diseases, Inborn genetic diseases
RS750256116 Health Risk Likely pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS771793540 Health Risk Likely pathogenic
RS776804939 Health Risk Likely pathogenic CTCF-related disorder, CTCF-related disorder
RS886039600 Health Risk Likely pathogenic
RS1064796062 Health Risk Pathogenic
RS1259610303 Health Risk Pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS1555534067 Health Risk Pathogenic Inborn genetic diseases, Inborn genetic diseases
RS1555534093 Health Risk Pathogenic
RS1555534147 Health Risk Pathogenic Inborn genetic diseases, CTCF-related neurodevelopmental disorder, Intellectual disability
RS1555535156 Health Risk Pathogenic CTCF-related neurodevelopmental disorder, Inborn genetic diseases, CTCF-related neurodevelopmental disorder
RS1555535157 Health Risk Pathogenic
RS1555535739 Health Risk Pathogenic Inborn genetic diseases, Inborn genetic diseases
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