CTCF Chromosome 16

CCCTC-binding factor
76 variants 76 Health Risk

Upload your DNA to see your personal genotypes for variants in CTCF.

What This Gene Does
This gene is a member of the BORIS + CTCF gene family and encodes a transcriptional regulator protein with 11 highly conserved zinc finger (ZF) domains. This nuclear protein is able to use different combinations of the ZF domains to bind different DNA target sequences and proteins. Depending upon the context of the site, the protein can bind a histone acetyltransferase (HAT)-containing complex and function as a transcriptional activator or bind a histone deacetylase (HDAC)-containing complex and function as a transcriptional repressor. If the protein is bound to a transcriptional insulator element, it can block communication between enhancers and upstream promoters, thereby regulating imprinted expression. Mutations in this gene have been associated with invasive breast cancers, prostate cancers, and Wilms' tumors. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2010]
Gene Info
Gene Group
"Zinc fingers C2H2-type|Cilia and flagella associated"
Locus Type
gene with protein product
Location
16q22.1
Ensembl
ENSG00000102974
Associated Conditions (10)
Inborn genetic diseases
CTCF-related neurodevelopmental disorder
CTCF-related disorder
Intellectual disability
Acute megakaryoblastic leukemia in down syndrome
Melanoma
See cases
Desmoplastic/nodular medulloblastoma
Alveolar rhabdomyosarcoma
CTCF-related syndromic intellectual disability
Key Variants
RS143508499
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS146712579
Conflicting classifications of pathogenicity
CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
Health Risk
RS148681672
Conflicting classifications of pathogenicity
Inborn genetic diseases, CTCF-related disorder, Inborn genetic diseases
Health Risk
RS1567610917
Conflicting classifications of pathogenicity
CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
Health Risk
RS1597718106
Conflicting classifications of pathogenicity
CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
Health Risk
RS201916739
Conflicting classifications of pathogenicity
Inborn genetic diseases, CTCF-related disorder, Inborn genetic diseases
Health Risk
RS2052068772
Conflicting classifications of pathogenicity
CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
Health Risk
RS2142839688
Conflicting classifications of pathogenicity
Health Risk
RS2142839733
Conflicting classifications of pathogenicity
CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
Health Risk
RS2142847418
Conflicting classifications of pathogenicity
CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
Health Risk
RS754444529
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS777402247
Conflicting classifications of pathogenicity
Inborn genetic diseases, CTCF-related disorder, Inborn genetic diseases
Health Risk
All Variants (76)
RSID Category Clinical Significance Conditions
RS1555536759 Health Risk Pathogenic
RS1567608876 Health Risk Pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS200677445 Health Risk Pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2052056650 Health Risk Pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2052063931 Health Risk Pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2052290589 Health Risk Pathogenic Inborn genetic diseases, Inborn genetic diseases
RS2142823841 Health Risk Pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2142824576 Health Risk Pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2142826609 Health Risk Pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2142826656 Health Risk Pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2142828055 Health Risk Pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2142847326 Health Risk Pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2142849423 Health Risk Pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS2142849782 Health Risk Pathogenic CTCF-related neurodevelopmental disorder, CTCF-related disorder, CTCF-related neurodevelopmental disorder
RS2142866705 Health Risk Pathogenic
RS2543484844 Health Risk Pathogenic See cases, See cases
RS763765410 Health Risk Pathogenic
RS879255570 Health Risk Pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS879255571 Health Risk Pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS886041901 Health Risk Pathogenic
RS886041997 Health Risk Pathogenic Desmoplastic/nodular medulloblastoma, Alveolar rhabdomyosarcoma, Desmoplastic/nodular medulloblastoma
RS1002125753 Health Risk Pathogenic/Likely pathogenic CTCF-related neurodevelopmental disorder, CTCF-related neurodevelopmental disorder
RS1470210640 Health Risk Pathogenic/Likely pathogenic
RS1555534189 Health Risk Pathogenic/Likely pathogenic Inborn genetic diseases, CTCF-related neurodevelopmental disorder, Inborn genetic diseases
RS2142847512 Health Risk Pathogenic/Likely pathogenic CTCF-related neurodevelopmental disorder, Inborn genetic diseases, CTCF-related neurodevelopmental disorder
RS879255516 Health Risk Pathogenic/Likely pathogenic CTCF-related neurodevelopmental disorder, CTCF-related syndromic intellectual disability, Inborn genetic diseases
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