COL1A1 Chromosome 17

Collagen type I alpha 1 chain
1224 variants 1224 Health Risk

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What This Gene Does
This gene encodes the pro-alpha1 chains of type I collagen whose triple helix comprises two alpha1 chains and one alpha2 chain. Type I is a fibril-forming collagen found in most connective tissues and is abundant in bone, cornea, dermis and tendon. Mutations in this gene are associated with osteogenesis imperfecta types I-IV, Ehlers-Danlos syndrome type VIIA, Ehlers-Danlos syndrome Classical type, Caffey Disease and idiopathic osteoporosis. Reciprocal translocations between chromosomes 17 and 22, where this gene and the gene for platelet-derived growth factor beta are located, are associated with a particular type of skin tumor called dermatofibrosarcoma protuberans, resulting from unregulated expression of the growth factor. Two transcripts, resulting from the use of alternate polyadenylation signals, have been identified for this gene. [provided by R. Dalgleish, Feb 2008]
Gene Info
Gene Group
Fibrillar collagens
Locus Type
gene with protein product
Location
17q21.33
Ensembl
ENSG00000108821
Associated Conditions (67)
Bone mineral density variation quantitative trait locus
Osteogenesis imperfecta type I
Cardiovascular phenotype
Osteogenesis imperfecta
Infantile cortical hyperostosis
Ehlers-Danlos syndrome
arthrochalasia type
See cases
COL1A1-related disorder
Connective tissue disorder
2
Familial thoracic aortic aneurysm and aortic dissection
8 conditions
7 conditions
Hypertrophic cardiomyopathy
Keratoconus
Osteogenesis imperfecta with normal sclerae
dominant form
Colon adenocarcinoma
Familial cancer of breast
+47 more conditions
Key Variants
RS1107946
association
Bone mineral density variation quantitative trait locus, Bone mineral density variation quantitative trait locus
Health Risk
RS11327935
association
Bone mineral density variation quantitative trait locus, Bone mineral density variation quantitative trait locus
Health Risk
RS1800012
association
Bone mineral density variation quantitative trait locus, Bone mineral density variation quantitative trait locus
Health Risk
RS1009435359
Conflicting classifications of pathogenicity
Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
Health Risk
RS1014402681
Conflicting classifications of pathogenicity
Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
Health Risk
RS1033263382
Conflicting classifications of pathogenicity
Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
Health Risk
RS1051473344
Conflicting classifications of pathogenicity
Osteogenesis imperfecta type I, Osteogenesis imperfecta, Infantile cortical hyperostosis
Health Risk
RS1061970
Conflicting classifications of pathogenicity
Infantile cortical hyperostosis, Ehlers-Danlos syndrome, arthrochalasia type
Health Risk
RS113950465
Conflicting classifications of pathogenicity
Osteogenesis imperfecta, Osteogenesis imperfecta type I, Cardiovascular phenotype
Health Risk
RS115997082
Conflicting classifications of pathogenicity
Ehlers-Danlos syndrome, arthrochalasia type, Infantile cortical hyperostosis
Health Risk
RS117672175
Conflicting classifications of pathogenicity
Osteogenesis imperfecta, Ehlers-Danlos syndrome, arthrochalasia type
Health Risk
RS1176922412
Conflicting classifications of pathogenicity
Cardiovascular phenotype, Osteogenesis imperfecta type I, Cardiovascular phenotype
Health Risk
All Variants (1224)
RSID Category Clinical Significance Conditions
RS72648325 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta with normal sclerae, dominant form
RS72648327 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Infantile cortical hyperostosis, Osteogenesis imperfecta
RS72648359 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS72651668 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS72653177 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS72654799 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Combined osteogenesis imperfecta and Ehlers-Danlos syndrome 1, Cardiovascular phenotype
RS72656307 Health Risk Conflicting classifications of pathogenicity Prostate cancer, Osteogenesis imperfecta type I, Ehlers-Danlos syndrome
RS72667025 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta, Osteogenesis imperfecta type I
RS72667032 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta, Connective tissue disorder, Infantile cortical hyperostosis
RS745320719 Health Risk Conflicting classifications of pathogenicity Infantile cortical hyperostosis, Osteogenesis imperfecta, Ehlers-Danlos syndrome
RS746341018 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS746453576 Health Risk Conflicting classifications of pathogenicity Infantile cortical hyperostosis, Osteogenesis imperfecta, Ehlers-Danlos syndrome
RS746671446 Health Risk Conflicting classifications of pathogenicity Ehlers-Danlos syndrome, arthrochalasia type, Infantile cortical hyperostosis
RS748149807 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS748856187 Health Risk Conflicting classifications of pathogenicity Ehlers-Danlos syndrome, arthrochalasia type, Osteogenesis imperfecta
RS749024135 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS749946056 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Congenital heart disease, Cardiovascular phenotype
RS750427423 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS750695521 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS750756697 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Ehlers-Danlos syndrome
RS751239116 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS751299130 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, 7 conditions, Osteogenesis imperfecta type I
RS751784955 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS751822769 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS752150906 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS753888456 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS754481870 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS754984293 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, 8 conditions
RS755601552 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS756297543 Health Risk Conflicting classifications of pathogenicity Infantile cortical hyperostosis, Ehlers-Danlos syndrome, arthrochalasia type
RS756337302 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta, Ehlers-Danlos syndrome, arthrochalasia type
RS756572885 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS756846639 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS757175933 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS757714964 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS757759451 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Ehlers-Danlos syndrome, arthrochalasia type
RS758351823 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS758395597 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS759080989 Health Risk Conflicting classifications of pathogenicity Cardiovascular phenotype, Osteogenesis imperfecta type I, Cardiovascular phenotype
RS759665341 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Ehlers-Danlos syndrome, Cardiovascular phenotype
RS760040029 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS760258050 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Ehlers-Danlos syndrome, arthrochalasia type
RS761895918 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS762315953 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS762653813 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta, Osteogenesis imperfecta type I, Osteogenesis imperfecta
RS762809403 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS762848021 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS763025405 Health Risk Conflicting classifications of pathogenicity Infantile cortical hyperostosis, Ehlers-Danlos syndrome, arthrochalasia type
RS763409550 Health Risk Conflicting classifications of pathogenicity Infantile cortical hyperostosis, Osteogenesis imperfecta, Ehlers-Danlos syndrome
RS764186905 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
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