COL1A1 Chromosome 17

Collagen type I alpha 1 chain
1224 variants 1224 Health Risk

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What This Gene Does
This gene encodes the pro-alpha1 chains of type I collagen whose triple helix comprises two alpha1 chains and one alpha2 chain. Type I is a fibril-forming collagen found in most connective tissues and is abundant in bone, cornea, dermis and tendon. Mutations in this gene are associated with osteogenesis imperfecta types I-IV, Ehlers-Danlos syndrome type VIIA, Ehlers-Danlos syndrome Classical type, Caffey Disease and idiopathic osteoporosis. Reciprocal translocations between chromosomes 17 and 22, where this gene and the gene for platelet-derived growth factor beta are located, are associated with a particular type of skin tumor called dermatofibrosarcoma protuberans, resulting from unregulated expression of the growth factor. Two transcripts, resulting from the use of alternate polyadenylation signals, have been identified for this gene. [provided by R. Dalgleish, Feb 2008]
Gene Info
Gene Group
Fibrillar collagens
Locus Type
gene with protein product
Location
17q21.33
Ensembl
ENSG00000108821
Associated Conditions (67)
Bone mineral density variation quantitative trait locus
Osteogenesis imperfecta type I
Cardiovascular phenotype
Osteogenesis imperfecta
Infantile cortical hyperostosis
Ehlers-Danlos syndrome
arthrochalasia type
See cases
COL1A1-related disorder
Connective tissue disorder
2
Familial thoracic aortic aneurysm and aortic dissection
8 conditions
7 conditions
Hypertrophic cardiomyopathy
Keratoconus
Osteogenesis imperfecta with normal sclerae
dominant form
Colon adenocarcinoma
Familial cancer of breast
+47 more conditions
Key Variants
RS1107946
association
Bone mineral density variation quantitative trait locus, Bone mineral density variation quantitative trait locus
Health Risk
RS11327935
association
Bone mineral density variation quantitative trait locus, Bone mineral density variation quantitative trait locus
Health Risk
RS1800012
association
Bone mineral density variation quantitative trait locus, Bone mineral density variation quantitative trait locus
Health Risk
RS1009435359
Conflicting classifications of pathogenicity
Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
Health Risk
RS1014402681
Conflicting classifications of pathogenicity
Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
Health Risk
RS1033263382
Conflicting classifications of pathogenicity
Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
Health Risk
RS1051473344
Conflicting classifications of pathogenicity
Osteogenesis imperfecta type I, Osteogenesis imperfecta, Infantile cortical hyperostosis
Health Risk
RS1061970
Conflicting classifications of pathogenicity
Infantile cortical hyperostosis, Ehlers-Danlos syndrome, arthrochalasia type
Health Risk
RS113950465
Conflicting classifications of pathogenicity
Osteogenesis imperfecta, Osteogenesis imperfecta type I, Cardiovascular phenotype
Health Risk
RS115997082
Conflicting classifications of pathogenicity
Ehlers-Danlos syndrome, arthrochalasia type, Infantile cortical hyperostosis
Health Risk
RS117672175
Conflicting classifications of pathogenicity
Osteogenesis imperfecta, Ehlers-Danlos syndrome, arthrochalasia type
Health Risk
RS1176922412
Conflicting classifications of pathogenicity
Cardiovascular phenotype, Osteogenesis imperfecta type I, Cardiovascular phenotype
Health Risk
All Variants (1224)
RSID Category Clinical Significance Conditions
RS148737409 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Ehlers-Danlos syndrome, arthrochalasia type
RS149301001 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Ehlers-Danlos syndrome, arthrochalasia type
RS149419718 Health Risk Conflicting classifications of pathogenicity Infantile cortical hyperostosis, Osteogenesis imperfecta, Ehlers-Danlos syndrome
RS150803124 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Ehlers-Danlos syndrome, arthrochalasia type
RS151171179 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Ehlers-Danlos syndrome, arthrochalasia type
RS1555572418 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS1555574417 Health Risk Conflicting classifications of pathogenicity Cardiovascular phenotype, Cardiovascular phenotype
RS1555575015 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I, Osteogenesis imperfecta
RS1555575857 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS1598302040 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS1800211 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Infantile cortical hyperostosis, Osteogenesis imperfecta
RS1800214 Health Risk Conflicting classifications of pathogenicity Infantile cortical hyperostosis, Ehlers-Danlos syndrome, arthrochalasia type
RS188887858 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS190098788 Health Risk Conflicting classifications of pathogenicity Ehlers-Danlos syndrome, arthrochalasia type, Osteogenesis imperfecta
RS1906585690 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS1907566530 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta, COL1A1-related disorder, Osteogenesis imperfecta
RS191166865 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS193922142 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta, Osteogenesis imperfecta type I, Ehlers-Danlos syndrome
RS193922150 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta, Osteogenesis imperfecta type I, Ehlers-Danlos syndrome
RS193922153 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Familial thoracic aortic aneurysm and aortic dissection, Connective tissue disorder
RS199514372 Health Risk Conflicting classifications of pathogenicity Ehlers-Danlos syndrome, arthrochalasia type, Osteogenesis imperfecta
RS199523510 Health Risk Conflicting classifications of pathogenicity Ehlers-Danlos syndrome, arthrochalasia type, Osteogenesis imperfecta
RS199626372 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Ehlers-Danlos syndrome
RS199891984 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta
RS200319927 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS200458986 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta with normal sclerae, dominant form, See cases
RS200620805 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS200689194 Health Risk Conflicting classifications of pathogenicity Infantile cortical hyperostosis, Osteogenesis imperfecta, Ehlers-Danlos syndrome
RS200882287 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta, Ehlers-Danlos syndrome, arthrochalasia type
RS201066018 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta, Infantile cortical hyperostosis, Ehlers-Danlos syndrome
RS201085309 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta, Infantile cortical hyperostosis, Ehlers-Danlos syndrome
RS201136122 Health Risk Conflicting classifications of pathogenicity Ehlers-Danlos syndrome, arthrochalasia type, Infantile cortical hyperostosis
RS201349683 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta with normal sclerae, dominant form, Osteogenesis imperfecta type I
RS201682029 Health Risk Conflicting classifications of pathogenicity Infantile cortical hyperostosis, Ehlers-Danlos syndrome, arthrochalasia type
RS201920416 Health Risk Conflicting classifications of pathogenicity Cardiovascular phenotype, Osteogenesis imperfecta type I, Cardiovascular phenotype
RS202221716 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS2144532190 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS2144552369 Health Risk Conflicting classifications of pathogenicity Ehlers-Danlos syndrome, Osteogenesis imperfecta, Osteogenesis imperfecta type I
RS2144555296 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS2144594835 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS2144600046 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS2509219496 Health Risk Conflicting classifications of pathogenicity Osteoporosis, Osteogenesis imperfecta type I, Osteoporosis
RS2734278 Health Risk Conflicting classifications of pathogenicity Ehlers-Danlos syndrome, arthrochalasia type, Osteogenesis imperfecta
RS367643097 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, 8 conditions
RS367952133 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta, Ehlers-Danlos syndrome, arthrochalasia type
RS367971695 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta, Infantile cortical hyperostosis, Ehlers-Danlos syndrome
RS368295399 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS368316440 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta, Infantile cortical hyperostosis, Ehlers-Danlos syndrome
RS369283493 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Ehlers-Danlos syndrome, Cardiovascular phenotype
RS369422507 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
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