CACNA1A Chromosome 19

Calcium voltage-gated channel subunit alpha1 A
746 variants 746 Health Risk

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What This Gene Does
Voltage-dependent calcium channels mediate the entry of calcium ions into excitable cells, and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, and gene expression. Calcium channels are multisubunit complexes composed of alpha-1, beta, alpha-2/delta, and gamma subunits. The channel activity is directed by the pore-forming alpha-1 subunit, whereas, the others act as auxiliary subunits regulating this activity. The distinctive properties of the calcium channel types are related primarily to the expression of a variety of alpha-1 isoforms, alpha-1A, B, C, D, E, and S. This gene encodes the alpha-1A subunit, which is predominantly expressed in neuronal tissue. Mutations in this gene are associated with 2 neurologic disorders, familial hemiplegic migraine and episodic ataxia 2. This gene also exhibits polymorphic variation due to (CAG)n-repeats. Multiple transcript variants encoding different isoforms have been found for this gene. In one set of transcript variants, the (CAG)n-repeats occur in the 3' UTR, and are not associated with any disease. But in another set of variants, an insertion extends the coding region to include the (CAG)n-repeats which encode a polyglutamine tract. Expansion of the (CAG)n-repeats from the normal 4-18 to 21-33 in the coding region is associated with spinocerebellar ataxia 6. [provided by RefSeq, Jul 2016]
Gene Info
Gene Group
Calcium voltage-gated channel alpha1 subunits
Locus Type
gene with protein product
Location
19p13.13
Ensembl
ENSG00000141837
Associated Conditions (60)
Episodic ataxia type 2
Developmental and epileptic encephalopathy
42
Inborn genetic diseases
CACNA1A-related disorder
Spastic paraparesis
Cerebellar ataxia
Intention tremor
Dysarthria
Mild global developmental delay
Intellectual disability
Cerebellar atrophy
52
Spinocerebellar ataxia type 6
Migraine
familial hemiplegic
1
Tip-toe gait
Hereditary episodic ataxia
Seizure
+40 more conditions
Key Variants
RS1005361810
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1006425986
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1010331313
Conflicting classifications of pathogenicity
Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
Health Risk
RS1013100046
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1032588483
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1033214914
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1038705410
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1042634748
Conflicting classifications of pathogenicity
Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
Health Risk
RS1057518615
Conflicting classifications of pathogenicity
CACNA1A-related disorder, CACNA1A-related disorder
Health Risk
RS1057518779
Conflicting classifications of pathogenicity
Spastic paraparesis, Cerebellar ataxia, Intention tremor
Health Risk
RS1057519429
Conflicting classifications of pathogenicity
Cerebellar ataxia, Intellectual disability, Cerebellar atrophy
Health Risk
RS1057521565
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
All Variants (746)
RSID Category Clinical Significance Conditions
RS764399373 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS764453012 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS765051582 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS765300713 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS765609971 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS766254024 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS766661019 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS767000559 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS767207007 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS767892925 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS768048563 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 1
RS768129470 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS768221184 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS768567834 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS768873463 Health Risk Conflicting classifications of pathogenicity Autism spectrum disorder, Autism spectrum disorder
RS768950814 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS769040794 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Developmental and epileptic encephalopathy, 42
RS769335170 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS769497214 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS769503871 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS770368215 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS771030765 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS771104002 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS771423362 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS771636070 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS771768635 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS771905201 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS772489659 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS772789381 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS772988279 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS773057074 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS773476849 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS773593740 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS773649403 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS774164327 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS774203605 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS774289573 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS774407963 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS774721955 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS775079497 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS775079932 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS775428832 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Inborn genetic diseases, Spinocerebellar ataxia type 6
RS776181081 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS776495488 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS776584949 Health Risk Conflicting classifications of pathogenicity Spinocerebellar ataxia type 6, Episodic ataxia type 2, Developmental and epileptic encephalopathy
RS776628272 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS776664699 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS776862279 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS777235021 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS777894367 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
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