CACNA1A Chromosome 19

Calcium voltage-gated channel subunit alpha1 A
746 variants 746 Health Risk

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What This Gene Does
Voltage-dependent calcium channels mediate the entry of calcium ions into excitable cells, and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, and gene expression. Calcium channels are multisubunit complexes composed of alpha-1, beta, alpha-2/delta, and gamma subunits. The channel activity is directed by the pore-forming alpha-1 subunit, whereas, the others act as auxiliary subunits regulating this activity. The distinctive properties of the calcium channel types are related primarily to the expression of a variety of alpha-1 isoforms, alpha-1A, B, C, D, E, and S. This gene encodes the alpha-1A subunit, which is predominantly expressed in neuronal tissue. Mutations in this gene are associated with 2 neurologic disorders, familial hemiplegic migraine and episodic ataxia 2. This gene also exhibits polymorphic variation due to (CAG)n-repeats. Multiple transcript variants encoding different isoforms have been found for this gene. In one set of transcript variants, the (CAG)n-repeats occur in the 3' UTR, and are not associated with any disease. But in another set of variants, an insertion extends the coding region to include the (CAG)n-repeats which encode a polyglutamine tract. Expansion of the (CAG)n-repeats from the normal 4-18 to 21-33 in the coding region is associated with spinocerebellar ataxia 6. [provided by RefSeq, Jul 2016]
Gene Info
Gene Group
Calcium voltage-gated channel alpha1 subunits
Locus Type
gene with protein product
Location
19p13.13
Ensembl
ENSG00000141837
Associated Conditions (60)
Episodic ataxia type 2
Developmental and epileptic encephalopathy
42
Inborn genetic diseases
CACNA1A-related disorder
Spastic paraparesis
Cerebellar ataxia
Intention tremor
Dysarthria
Mild global developmental delay
Intellectual disability
Cerebellar atrophy
52
Spinocerebellar ataxia type 6
Migraine
familial hemiplegic
1
Tip-toe gait
Hereditary episodic ataxia
Seizure
+40 more conditions
Key Variants
RS1005361810
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1006425986
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1010331313
Conflicting classifications of pathogenicity
Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
Health Risk
RS1013100046
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1032588483
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1033214914
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1038705410
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1042634748
Conflicting classifications of pathogenicity
Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
Health Risk
RS1057518615
Conflicting classifications of pathogenicity
CACNA1A-related disorder, CACNA1A-related disorder
Health Risk
RS1057518779
Conflicting classifications of pathogenicity
Spastic paraparesis, Cerebellar ataxia, Intention tremor
Health Risk
RS1057519429
Conflicting classifications of pathogenicity
Cerebellar ataxia, Intellectual disability, Cerebellar atrophy
Health Risk
RS1057521565
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
All Variants (746)
RSID Category Clinical Significance Conditions
RS201836062 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS202216404 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS2054721635 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS2055610097 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS2056510928 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS2056767062 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Spinocerebellar ataxia type 6
RS2056767982 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Migraine
RS2056768058 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 1
RS2057947681 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 1
RS2059067761 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS2144622540 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS2144646626 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS2144955398 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS2145002415 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS2304094 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Developmental and epileptic encephalopathy, 42
RS2512618280 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS2512763658 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS2513049302 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS2513151702 Health Risk Conflicting classifications of pathogenicity
RS2513175466 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS267605294 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS367882437 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS368081042 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS368100270 Health Risk Conflicting classifications of pathogenicity Seizure, Episodic ataxia type 2, Developmental and epileptic encephalopathy
RS368183370 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS368203745 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS368257155 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS368480650 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS368791169 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS369033909 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS369084322 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS369146237 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS369440853 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS369555957 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS369742607 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS370396470 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS370514102 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS370746809 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS371116746 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS371595464 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS371733571 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS371757002 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS371957971 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS371957992 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS371972266 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS372017604 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS373224251 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS373229577 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS373678395 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS374063403 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
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