CACNA1A Chromosome 19

Calcium voltage-gated channel subunit alpha1 A
746 variants 746 Health Risk

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What This Gene Does
Voltage-dependent calcium channels mediate the entry of calcium ions into excitable cells, and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, and gene expression. Calcium channels are multisubunit complexes composed of alpha-1, beta, alpha-2/delta, and gamma subunits. The channel activity is directed by the pore-forming alpha-1 subunit, whereas, the others act as auxiliary subunits regulating this activity. The distinctive properties of the calcium channel types are related primarily to the expression of a variety of alpha-1 isoforms, alpha-1A, B, C, D, E, and S. This gene encodes the alpha-1A subunit, which is predominantly expressed in neuronal tissue. Mutations in this gene are associated with 2 neurologic disorders, familial hemiplegic migraine and episodic ataxia 2. This gene also exhibits polymorphic variation due to (CAG)n-repeats. Multiple transcript variants encoding different isoforms have been found for this gene. In one set of transcript variants, the (CAG)n-repeats occur in the 3' UTR, and are not associated with any disease. But in another set of variants, an insertion extends the coding region to include the (CAG)n-repeats which encode a polyglutamine tract. Expansion of the (CAG)n-repeats from the normal 4-18 to 21-33 in the coding region is associated with spinocerebellar ataxia 6. [provided by RefSeq, Jul 2016]
Gene Info
Gene Group
Calcium voltage-gated channel alpha1 subunits
Locus Type
gene with protein product
Location
19p13.13
Ensembl
ENSG00000141837
Associated Conditions (60)
Episodic ataxia type 2
Developmental and epileptic encephalopathy
42
Inborn genetic diseases
CACNA1A-related disorder
Spastic paraparesis
Cerebellar ataxia
Intention tremor
Dysarthria
Mild global developmental delay
Intellectual disability
Cerebellar atrophy
52
Spinocerebellar ataxia type 6
Migraine
familial hemiplegic
1
Tip-toe gait
Hereditary episodic ataxia
Seizure
+40 more conditions
Key Variants
RS1005361810
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1006425986
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1010331313
Conflicting classifications of pathogenicity
Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
Health Risk
RS1013100046
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1032588483
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1033214914
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1038705410
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
RS1042634748
Conflicting classifications of pathogenicity
Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
Health Risk
RS1057518615
Conflicting classifications of pathogenicity
CACNA1A-related disorder, CACNA1A-related disorder
Health Risk
RS1057518779
Conflicting classifications of pathogenicity
Spastic paraparesis, Cerebellar ataxia, Intention tremor
Health Risk
RS1057519429
Conflicting classifications of pathogenicity
Cerebellar ataxia, Intellectual disability, Cerebellar atrophy
Health Risk
RS1057521565
Conflicting classifications of pathogenicity
Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
Health Risk
All Variants (746)
RSID Category Clinical Significance Conditions
RS1005361810 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1006425986 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1010331313 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS1013100046 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1032588483 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1033214914 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1038705410 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1042634748 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS1057518615 Health Risk Conflicting classifications of pathogenicity CACNA1A-related disorder, CACNA1A-related disorder
RS1057518779 Health Risk Conflicting classifications of pathogenicity Spastic paraparesis, Cerebellar ataxia, Intention tremor
RS1057519429 Health Risk Conflicting classifications of pathogenicity Cerebellar ataxia, Intellectual disability, Cerebellar atrophy
RS1057521565 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1057521706 Health Risk Conflicting classifications of pathogenicity
RS1057521920 Health Risk Conflicting classifications of pathogenicity CACNA1A-related disorder, Developmental and epileptic encephalopathy, 42
RS1057521929 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS1057522420 Health Risk Conflicting classifications of pathogenicity Spinocerebellar ataxia type 6, Spinocerebellar ataxia type 6
RS1057522421 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS1057523197 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS1064793075 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1064796709 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS111366222 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS1162464868 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1164174661 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Episodic ataxia type 2
RS1189054127 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1195908031 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS1198604369 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Episodic ataxia type 2, Developmental and epileptic encephalopathy
RS1202322408 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1205866071 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1212952550 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS121908235 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS121908242 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1219651327 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1220294928 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS1262547488 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1265632174 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1268738297 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1268938831 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1269205597 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1270399331 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS1271411894 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS1275496281 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1275961783 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Episodic ataxia type 2, Developmental and epileptic encephalopathy
RS1290079536 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS1310830010 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1317740666 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1325697290 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy, 42, Episodic ataxia type 2
RS1335209785 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1336146310 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
RS1346036017 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Episodic ataxia type 2, Developmental and epileptic encephalopathy
RS1353506638 Health Risk Conflicting classifications of pathogenicity Episodic ataxia type 2, Developmental and epileptic encephalopathy, 42
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