RS9264942 LOC112267902
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What This Variant Does
"This SNP (C/T) is in 5' region of the HLA-C gene, 35 kb away from transcription initiation in or aro...
Associated Conditions
HIV-1 VIREMIA
SUSCEPTIBILITY TO
HIV-1 VIREMIA
SUSCEPTIBILITY TO
GWAS Studies (7)
| Trait | Risk Allele | OR / Beta | P-value | Study |
|---|---|---|---|---|
| HIV-1 control | C | OR: 2.9 | 3E-35 | PubMed |
| HIV-1 control | C | OR: 5.3 | 6E-32 | PubMed |
| CRTAM/VCAM1 protein level ratio | — | β: 0.08 | 4E-29 | PubMed |
| Crohn's disease | C | OR: 1.15 | 5E-28 | PubMed |
| Crohn's disease | — | — | 5E-25 | PubMed |
| MHC class I polypeptide-related sequence A levels | C | OR: 0.27 | 1E-20 | PubMed |
| LILRA5 protein levels | C | β: 0.039 | 1E-12 | PubMed |
ClinVar Assertions (2)
NC_000006.12:g.31306603T>C
NC_000006.12:g.31306603T>C
Population Frequencies
1kG AFR
73%
1kG ALL
36.8%
1kG AMR
30.4%
1kG EAS
60.7%
1kG EUR
63.8%
1kG SAS
52.5%