Genetic variant
rs738409 a variant in the PNPLA3 gene
rs738409 is a single-letter difference in the PNPLA3 gene, on chromosome 22. ClinVar, the public archive of variant interpretations, lists it as conflicting interpretations: laboratories that have assessed it do not agree on whether it matters. It has been reported in connection with Nafld1 and Hepatic steatosis. Carrying it does not, on its own, mean you have or will develop any condition.
What is this?
Your DNA is a long sequence of four letters. At a few million positions, people commonly differ by a single letter; each of those positions is called a SNP (“snip”), and rs738409 is the catalogue number of one of them, in the PNPLA3 gene. Which letters you carry there — one copy from each parent — is your genotype.
PNPLA3 (patatin like domain 3, 1-acylglycerol-3-phosphate O-acyltransferase): The protein encoded by this gene is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes. The encoded protein, which appears to be membrane bound, may be involved in the balance of energy usage/storage in adipocytes. [provided by RefSeq, Jul 2008]
Gene description from NCBI Gene
rs738409 is a SNP in the PNPLA3 gene. In all HapMap populations the most common allele is a C on the...
From SNPedia
Why might it matter?
ClinVar records this variant as conflicting interpretations, meaning laboratories that have assessed it do not agree on whether it matters. A classification describes the variant, not you: what it means for one person depends on their genotype, their family history and often on other genes and circumstances.
Conditions it has been reported with
Listed in ClinVar submissions for this variant. Being listed is a report of an association, not a statement that the variant causes the condition in any given person.
Supplements
Do I have this variant?
If you have taken a consumer DNA test (23andMe, AncestryDNA and similar), you can download its raw data file and check. Create a free account, upload the file, and this page will show the letters you carry at rs738409, if your test read this position.
Connect this with your blood results
A gene is a fixed instruction; a blood test shows what your body is doing now. CheckMyBloods reads the two side by side, so a variant can be set against the markers it could plausibly affect.
Blood markers related to PNPLA3
PNPLA3 variants increase risk of fatty liver disease. Monitor liver enzymes.
Blood markers do not diagnose a genetic condition, and a variant does not explain a blood result on its own. Together, with symptoms and family history, they give a clinician context.
What should I do next?
- Find out whether you carry it. Reading about a variant says nothing about you until you know your genotype.
- Put it in context. Add your blood results, so the variant can be read against what your body is doing.
- Ask questions. Dr. Hemsworth, our AI assistant, can explain this variant and your results in plain English.
- Take anything that worries you to a professional. A GP or genetic counsellor can order a confirmatory test and interpret it with your history.
This page is general information drawn from public research databases. It cannot diagnose anything, and it is not a substitute for advice from a doctor or genetic counsellor who knows your history.
Technical details
- dbSNP ID
- rs738409
- Gene
- PNPLA3
- Position
- chr22:43928847
- ClinVar classification
- Conflicting classifications of pathogenicity; risk factor
Genome-wide association studies (20)
| Trait | Risk allele | OR / beta | P-value | Study |
|---|---|---|---|---|
| Alanine aminotransferase levels | G | β 0.022 | 2E-495 | PubMed |
| Aspartate aminotransferase levels | G | β 0.088 | 3E-361 | PubMed |
| Alanine transaminase (ALT, mean, inv-norm transformed) | C | OR 0.14 | 1E-323 | PubMed |
| Alanine transaminase (ALT, maximum, inv-norm transformed) | C | OR 0.13 | 1E-323 | PubMed |
| Aspartate aminotransferase (AST, mean, inv-norm transformed) | C | OR 0.14 | 1E-323 | PubMed |
| Alanine transaminase (ALT, minimum, inv-norm transformed) | C | OR 0.11 | 1E-323 | PubMed |
| Alanine transaminase (ALT, minimum, inv-norm transformed) | C | OR 0.12 | 1E-323 | PubMed |
| Aspartate aminotransferase (AST, maximum, inv-norm transformed) | C | OR 0.12 | 1E-323 | PubMed |
| Alanine transaminase (ALT, maximum, inv-norm transformed) | C | OR 0.12 | 1E-323 | PubMed |
| Alanine transaminase (ALT, mean, inv-norm transformed) | C | OR 0.13 | 1E-323 | PubMed |
| Abnormal results of function study of liver (PheCode 573.7) | C | OR 0.35 | 1E-323 | PubMed |
| Chronic liver disease and cirrhosis (PheCode 571) | C | OR 0.36 | 1E-323 | PubMed |
| Abnormal results of function study of liver (PheCode 573.7) | C | OR 0.37 | 1E-323 | PubMed |
| Aspartate aminotransferase (AST, maximum, inv-norm transformed) | C | OR 0.13 | 1E-323 | PubMed |
| Other chronic nonalcoholic liver disease (PheCode 571.5) | C | OR 0.37 | 1E-323 | PubMed |
| Chronic liver disease and cirrhosis (PheCode 571) | C | OR 0.39 | 1E-323 | PubMed |
| Aspartate aminotransferase (AST, minimum, inv-norm transformed) | C | OR 0.12 | 1E-323 | PubMed |
| Aspartate aminotransferase (AST, mean, inv-norm transformed) | C | OR 0.16 | 1E-323 | PubMed |
| Other chronic nonalcoholic liver disease (PheCode 571.5) | C | OR 0.41 | 1E-323 | PubMed |
| Aspartate aminotransferase (AST, minimum, inv-norm transformed) | C | OR 0.15 | 1E-323 | PubMed |
Sources
- dbSNP: rs738409 — the reference record
- ClinVar — clinical interpretations submitted by laboratories
- SNPedia — community-written summaries
- NCBI Gene: PNPLA3
- Ensembl: PNPLA3
- GWAS Catalog — association studies