Genetic variant

rs77375493 a variant in the JAK2 gene

rs77375493 is a single-letter difference in the JAK2 gene, on chromosome 9. ClinVar, the public archive of variant interpretations, lists it as pathogenic: able to cause or contribute to disease. It has been reported in connection with Acquired polycythemia vera and Primary myelofibrosis, among others. Carrying it does not, on its own, mean you have or will develop any condition.

What is this?

Your DNA is a long sequence of four letters. At a few million positions, people commonly differ by a single letter; each of those positions is called a SNP (“snip”), and rs77375493 is the catalogue number of one of them, in the JAK2 gene. Which letters you carry there — one copy from each parent — is your genotype.

JAK2 (Janus kinase 2): This gene encodes a non-receptor tyrosine kinase that plays a central role in cytokine and growth factor signalling. The primary isoform of this protein has an N-terminal FERM domain that is required for erythropoietin receptor association, an SH2 domain that binds STAT transcription factors, a pseudokinase domain and a C-terminal tyrosine kinase domain.

Gene description from NCBI Gene

rs77375493, also known as V617F or Val617Phe, is a variant considered to generally be acquired (i.e....

From SNPedia

Why might it matter?

ClinVar records this variant as pathogenic, meaning able to cause or contribute to disease. A classification describes the variant, not you: what it means for one person depends on their genotype, their family history and often on other genes and circumstances.

Conditions it has been reported with

Listed in ClinVar submissions for this variant. Being listed is a report of an association, not a statement that the variant causes the condition in any given person.

Do I have this variant?

If you have taken a consumer DNA test (23andMe, AncestryDNA and similar), you can download its raw data file and check. Create a free account, upload the file, and this page will show the letters you carry at rs77375493, if your test read this position.

Connect this with your blood results

A gene is a fixed instruction; a blood test shows what your body is doing now. CheckMyBloods reads the two side by side, so a variant can be set against the markers it could plausibly affect.

Blood markers do not diagnose a genetic condition, and a variant does not explain a blood result on its own. Together, with symptoms and family history, they give a clinician context.

What should I do next?

  1. Find out whether you carry it. Reading about a variant says nothing about you until you know your genotype.
  2. Put it in context. Add your blood results, so the variant can be read against what your body is doing.
  3. Ask questions. Dr. Hemsworth, our AI assistant, can explain this variant and your results in plain English.
  4. Take anything that worries you to a professional. A GP or genetic counsellor can order a confirmatory test and interpret it with your history.

This page is general information drawn from public research databases. It cannot diagnose anything, and it is not a substitute for advice from a doctor or genetic counsellor who knows your history.

Technical details

dbSNP ID
rs77375493
Gene
JAK2
Position
chr9:5073770
ClinVar classification
Pathogenic

Genome-wide association studies (20)

TraitRisk alleleOR / betaP-valueStudy
Myeloproliferative disease (PheCode 200) G OR 5.06 1E-323 PubMed
Polycythemia vera (PheCode 200.1) G OR 5.33 1E-323 PubMed
red cell diameter width (RDW, mean, inv-norm transformed) G OR 2.63 1E-323 PubMed
Myeloproliferative disease (PheCode 200) G OR 5.14 1E-323 PubMed
red cell diameter width (RDW, maximum, inv-norm transformed) G OR 2.26 9E-308 PubMed
Polycythemia vera (PheCode 200.1) G OR 5.19 4E-305 PubMed
red cell diameter width (RDW, minimum, inv-norm transformed) G OR 2.17 2E-264 PubMed
platelet count (maximum, inv-norm transformed) G OR 2.83 5E-234 PubMed
red cell diameter width (RDW, mean, inv-norm transformed) G OR 2.42 6E-206 PubMed
Other diseases of blood and blood-forming organs (PheCode 289) G OR 3.42 2E-199 PubMed
red cell diameter width (RDW, maximum, inv-norm transformed) G OR 2.14 3E-193 PubMed
monocyte (fraction, mean, inv-norm transformed) G OR 1.78 8E-171 PubMed
red blood cell count (RBC, maximum, inv-norm transformed) G OR 1.59 4E-165 PubMed
white blood cell count (WBC, mean, inv-norm transformed) G OR 1.69 2E-160 PubMed
mean corpuscular hemoglobin concentration (MCHC, minimum, inv-norm transformed) G OR 1.53 1E-157 PubMed
lymphocyte (fraction, mean, inv-norm transformed) G OR 1.49 8E-155 PubMed
red cell diameter width (RDW, minimum, inv-norm transformed) G OR 1.97 2E-134 PubMed
monocyte (fraction, minimum, inv-norm transformed) G OR 1.53 2E-133 PubMed
white blood cell count (WBC, maximum, inv-norm transformed) G OR 1.48 5E-132 PubMed
neutrophil (fraction, mean, inv-norm transformed) G OR 1.59 6E-129 PubMed

Sources