Genetic variant
rs77375493 a variant in the JAK2 gene
rs77375493 is a single-letter difference in the JAK2 gene, on chromosome 9. ClinVar, the public archive of variant interpretations, lists it as pathogenic: able to cause or contribute to disease. It has been reported in connection with Acquired polycythemia vera and Primary myelofibrosis, among others. Carrying it does not, on its own, mean you have or will develop any condition.
What is this?
Your DNA is a long sequence of four letters. At a few million positions, people commonly differ by a single letter; each of those positions is called a SNP (“snip”), and rs77375493 is the catalogue number of one of them, in the JAK2 gene. Which letters you carry there — one copy from each parent — is your genotype.
JAK2 (Janus kinase 2): This gene encodes a non-receptor tyrosine kinase that plays a central role in cytokine and growth factor signalling. The primary isoform of this protein has an N-terminal FERM domain that is required for erythropoietin receptor association, an SH2 domain that binds STAT transcription factors, a pseudokinase domain and a C-terminal tyrosine kinase domain.
Gene description from NCBI Gene
rs77375493, also known as V617F or Val617Phe, is a variant considered to generally be acquired (i.e....
From SNPedia
Why might it matter?
ClinVar records this variant as pathogenic, meaning able to cause or contribute to disease. A classification describes the variant, not you: what it means for one person depends on their genotype, their family history and often on other genes and circumstances.
Conditions it has been reported with
- Acquired polycythemia vera
- Primary myelofibrosis
- Acute myeloid leukemia
- Budd-Chiari syndrome, susceptibility to, somatic
- Thrombocythemia 3
- Primary familial polycythemia due to EPO receptor mutation
- Myeloproliferative disorder
- Polycythemia
- 6 conditions
- Splenomegaly
- JAK2-related disorder
Listed in ClinVar submissions for this variant. Being listed is a report of an association, not a statement that the variant causes the condition in any given person.
Do I have this variant?
If you have taken a consumer DNA test (23andMe, AncestryDNA and similar), you can download its raw data file and check. Create a free account, upload the file, and this page will show the letters you carry at rs77375493, if your test read this position.
Connect this with your blood results
A gene is a fixed instruction; a blood test shows what your body is doing now. CheckMyBloods reads the two side by side, so a variant can be set against the markers it could plausibly affect.
Blood markers do not diagnose a genetic condition, and a variant does not explain a blood result on its own. Together, with symptoms and family history, they give a clinician context.
What should I do next?
- Find out whether you carry it. Reading about a variant says nothing about you until you know your genotype.
- Put it in context. Add your blood results, so the variant can be read against what your body is doing.
- Ask questions. Dr. Hemsworth, our AI assistant, can explain this variant and your results in plain English.
- Take anything that worries you to a professional. A GP or genetic counsellor can order a confirmatory test and interpret it with your history.
This page is general information drawn from public research databases. It cannot diagnose anything, and it is not a substitute for advice from a doctor or genetic counsellor who knows your history.
Technical details
- dbSNP ID
- rs77375493
- Gene
- JAK2
- Position
- chr9:5073770
- ClinVar classification
- Pathogenic
Genome-wide association studies (20)
| Trait | Risk allele | OR / beta | P-value | Study |
|---|---|---|---|---|
| Myeloproliferative disease (PheCode 200) | G | OR 5.06 | 1E-323 | PubMed |
| Polycythemia vera (PheCode 200.1) | G | OR 5.33 | 1E-323 | PubMed |
| red cell diameter width (RDW, mean, inv-norm transformed) | G | OR 2.63 | 1E-323 | PubMed |
| Myeloproliferative disease (PheCode 200) | G | OR 5.14 | 1E-323 | PubMed |
| red cell diameter width (RDW, maximum, inv-norm transformed) | G | OR 2.26 | 9E-308 | PubMed |
| Polycythemia vera (PheCode 200.1) | G | OR 5.19 | 4E-305 | PubMed |
| red cell diameter width (RDW, minimum, inv-norm transformed) | G | OR 2.17 | 2E-264 | PubMed |
| platelet count (maximum, inv-norm transformed) | G | OR 2.83 | 5E-234 | PubMed |
| red cell diameter width (RDW, mean, inv-norm transformed) | G | OR 2.42 | 6E-206 | PubMed |
| Other diseases of blood and blood-forming organs (PheCode 289) | G | OR 3.42 | 2E-199 | PubMed |
| red cell diameter width (RDW, maximum, inv-norm transformed) | G | OR 2.14 | 3E-193 | PubMed |
| monocyte (fraction, mean, inv-norm transformed) | G | OR 1.78 | 8E-171 | PubMed |
| red blood cell count (RBC, maximum, inv-norm transformed) | G | OR 1.59 | 4E-165 | PubMed |
| white blood cell count (WBC, mean, inv-norm transformed) | G | OR 1.69 | 2E-160 | PubMed |
| mean corpuscular hemoglobin concentration (MCHC, minimum, inv-norm transformed) | G | OR 1.53 | 1E-157 | PubMed |
| lymphocyte (fraction, mean, inv-norm transformed) | G | OR 1.49 | 8E-155 | PubMed |
| red cell diameter width (RDW, minimum, inv-norm transformed) | G | OR 1.97 | 2E-134 | PubMed |
| monocyte (fraction, minimum, inv-norm transformed) | G | OR 1.53 | 2E-133 | PubMed |
| white blood cell count (WBC, maximum, inv-norm transformed) | G | OR 1.48 | 5E-132 | PubMed |
| neutrophil (fraction, mean, inv-norm transformed) | G | OR 1.59 | 6E-129 | PubMed |
Sources
- dbSNP: rs77375493 — the reference record
- ClinVar — clinical interpretations submitted by laboratories
- SNPedia — community-written summaries
- NCBI Gene: JAK2
- Ensembl: JAK2
- GWAS Catalog — association studies