Genetic variant
rs6742078 a variant in the UGT1A10 gene
rs6742078 is a single-letter difference in the UGT1A10 gene, on chromosome 2. ClinVar, the public archive of variant interpretations, lists it as benign: not known to cause disease. It has been reported in connection with Bilirubin and Serum level of, among others. Carrying it does not, on its own, mean you have or will develop any condition.
What is this?
Your DNA is a long sequence of four letters. At a few million positions, people commonly differ by a single letter; each of those positions is called a SNP (“snip”), and rs6742078 is the catalogue number of one of them, in the UGT1A10 gene. Which letters you carry there — one copy from each parent — is your genotype.
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From SNPedia
Why might it matter?
ClinVar records this variant as benign, meaning not known to cause disease. A classification describes the variant, not you: what it means for one person depends on their genotype, their family history and often on other genes and circumstances.
Conditions it has been reported with
Listed in ClinVar submissions for this variant. Being listed is a report of an association, not a statement that the variant causes the condition in any given person.
Do I have this variant?
If you have taken a consumer DNA test (23andMe, AncestryDNA and similar), you can download its raw data file and check. Create a free account, upload the file, and this page will show the letters you carry at rs6742078, if your test read this position.
Connect this with your blood results
A gene is a fixed instruction; a blood test shows what your body is doing now. CheckMyBloods reads the two side by side, so a variant can be set against the markers it could plausibly affect.
Blood markers do not diagnose a genetic condition, and a variant does not explain a blood result on its own. Together, with symptoms and family history, they give a clinician context.
What should I do next?
- Find out whether you carry it. Reading about a variant says nothing about you until you know your genotype.
- Put it in context. Add your blood results, so the variant can be read against what your body is doing.
- Ask questions. Dr. Hemsworth, our AI assistant, can explain this variant and your results in plain English.
- Take anything that worries you to a professional. A GP or genetic counsellor can order a confirmatory test and interpret it with your history.
This page is general information drawn from public research databases. It cannot diagnose anything, and it is not a substitute for advice from a doctor or genetic counsellor who knows your history.
Technical details
- dbSNP ID
- rs6742078
- Gene
- UGT1A10
- Position (GRCh38)
- chr2:233763992
- Variant type
- snv
- Consequence
- intron variant
- ClinVar classification
- Benign; association
Genome-wide association studies (20)
| Trait | Risk allele | OR / beta | P-value | Study |
|---|---|---|---|---|
| Bilirubin levels | T | OR 0.23 | 5E-324 | PubMed |
| Plasma bilirubin degradation product, C17H18N2O4 (2)** levels in chronic kidney disease | T | OR 0.44 | 4E-195 | PubMed |
| Bilirubin levels | — | OR 0.18 | 1E-158 | PubMed |
| Bilirubin degradation product, C17H20N2O5 (1) levels | T | OR 0.39 | 9E-135 | PubMed |
| Bilirubin levels | — | OR 0.17 | 2E-78 | PubMed |
| Direct bilirubin levels x insomnia interaction | — | — | 3E-69 | PubMed |
| Total bilirubin levels x insomnia interaction | — | — | 3E-69 | PubMed |
| UDP-glucuronosyltransferase 1-6 levels | T | OR 0.24 | 6E-69 | PubMed |
| Serum metabolite levels | — | β 0.086 | 2E-38 | PubMed |
| Serum levels of protein UGT1A6 | T | OR 0.26 | 2E-36 | PubMed |
| Total bilirubin x commonly-tested environments (Sex, Age, Ever-drinking, Ever-smoking, and Current-smoking) interaction | T | — | 2E-30 | PubMed |
| Total bilirubin levels | T | OR 0.53 | 4E-28 | PubMed |
| Circulating cell-free DNA | T | OR 0.34 | 2E-23 | PubMed |
| Abnormal results of function study of liver (PheCode 573.7) | G | β 0.072 | 1E-21 | PubMed |
| Total bilirubin x current-smoking interaction | T | β 0.047 | 1E-21 | PubMed |
| Bilirubin (z,z) levels | — | OR 0.73 | 3E-20 | PubMed |
| Serum levels of protein CKAP4 | T | OR 0.19 | 1E-19 | PubMed |
| X-11530 levels | — | OR 0.68 | 4E-17 | PubMed |
| X-24849 levels | — | OR 0.72 | 3E-16 | PubMed |
| X-21448 levels | — | OR 0.79 | 5E-16 | PubMed |
ClinVar submissions (4)
How common the less frequent letter is
- 1kG AFR
- 52.9%
- 1kG ALL
- 34.8%
- 1kG AMR
- 37.8%
- 1kG EAS
- 87%
- 1kG EUR
- 70.2%
- 1kG SAS
- 56.5%
Sources
- dbSNP: rs6742078 — the reference record
- ClinVar — clinical interpretations submitted by laboratories
- SNPedia — community-written summaries
- GWAS Catalog — association studies