Genetic variant
rs2524079
rs2524079 is a single-letter difference in human DNA, on chromosome 6. Carrying it does not, on its own, mean you have or will develop any condition.
What is this?
Your DNA is a long sequence of four letters. At a few million positions, people commonly differ by a single letter; each of those positions is called a SNP (“snip”), and rs2524079 is the catalogue number of one of them. Which letters you carry there — one copy from each parent — is your genotype.
We hold only the basic reference record for this variant: its ID and position. Many catalogued variants have never been linked to anything.
Why might it matter?
ClinVar holds no clinical classification for this variant. That is the usual case: most catalogued variants have no known effect on health.
Do I have this variant?
If you have taken a consumer DNA test (23andMe, AncestryDNA and similar), you can download its raw data file and check. Create a free account, upload the file, and this page will show the letters you carry at rs2524079, if your test read this position.
Connect this with your blood results
A gene is a fixed instruction; a blood test shows what your body is doing now. CheckMyBloods reads the two side by side, so a variant can be set against the markers it could plausibly affect.
Blood markers do not diagnose a genetic condition, and a variant does not explain a blood result on its own. Together, with symptoms and family history, they give a clinician context.
What should I do next?
- Find out whether you carry it. Reading about a variant says nothing about you until you know your genotype.
- Put it in context. Add your blood results, so the variant can be read against what your body is doing.
- Ask questions. Dr. Hemsworth, our AI assistant, can explain this variant and your results in plain English.
- Take anything that worries you to a professional. A GP or genetic counsellor can order a confirmatory test and interpret it with your history.
This page is general information drawn from public research databases. It cannot diagnose anything, and it is not a substitute for advice from a doctor or genetic counsellor who knows your history.
Technical details
- dbSNP ID
- rs2524079
- Position
- chr6:31274397
Genome-wide association studies (20)
| Trait | Risk allele | OR / beta | P-value | Study |
|---|---|---|---|---|
| White blood cell count | A | β 0.072 | 9E-270 | PubMed |
| Neutrophil count | A | β 0.059 | 3E-162 | PubMed |
| white blood cell count (WBC, minimum, inv-norm transformed) | G | β 0.072 | 2E-127 | PubMed |
| White blood cell count | A | β 0.087 | 2E-126 | PubMed |
| Neutrophil count | G | — | 4E-109 | PubMed |
| Basophil count | G | — | 2E-76 | PubMed |
| white blood cell count (WBC, minimum, inv-norm transformed) | G | β 0.054 | 9E-74 | PubMed |
| white blood cell count (WBC, mean, inv-norm transformed) | G | β 0.056 | 3E-73 | PubMed |
| Granulocyte count | A | β 0.064 | 9E-69 | PubMed |
| Sum basophil neutrophil counts | A | β 0.064 | 2E-68 | PubMed |
| Sum neutrophil eosinophil counts | A | β 0.063 | 6E-68 | PubMed |
| Neutrophil count | A | β 0.063 | 1E-67 | PubMed |
| Basophil count | A | — | 1E-51 | PubMed |
| Basophil count | A | β 0.031 | 5E-51 | PubMed |
| white blood cell count (WBC, maximum, inv-norm transformed) | G | β 0.041 | 4E-46 | PubMed |
| Neutrophil count | A | β 0.061 | 6E-32 | PubMed |
| Basophil count | A | β 0.027 | 1E-31 | PubMed |
| white blood cell count (WBC, mean, inv-norm transformed) | G | β 0.059 | 2E-21 | PubMed |
| MAPRE3 protein levels | A | β 0.047 | 5E-15 | PubMed |
| Blood cell traits latent factor 1 (white cell) | — | — | 2E-13 | PubMed |
Sources
- dbSNP: rs2524079 — the reference record
- ClinVar — clinical interpretations submitted by laboratories
- SNPedia — community-written summaries
- GWAS Catalog — association studies