Genetic variant
rs1133400
rs1133400 is a single-letter difference in human DNA, on chromosome 10. Carrying it does not, on its own, mean you have or will develop any condition.
What is this?
Your DNA is a long sequence of four letters. At a few million positions, people commonly differ by a single letter; each of those positions is called a SNP (“snip”), and rs1133400 is the catalogue number of one of them. Which letters you carry there — one copy from each parent — is your genotype.
A distinct and replicable variant of the squamous cell carcinoma gene inositol polyphosphate-5-phosphatase modifies the susceptibility of arsenic-associated skin lesions in Bangladesh
From SNPedia
Why might it matter?
ClinVar holds no clinical classification for this variant. That is the usual case: most catalogued variants have no known effect on health.
Do I have this variant?
If you have taken a consumer DNA test (23andMe, AncestryDNA and similar), you can download its raw data file and check. Create a free account, upload the file, and this page will show the letters you carry at rs1133400, if your test read this position.
Connect this with your blood results
A gene is a fixed instruction; a blood test shows what your body is doing now. CheckMyBloods reads the two side by side, so a variant can be set against the markers it could plausibly affect.
Blood markers do not diagnose a genetic condition, and a variant does not explain a blood result on its own. Together, with symptoms and family history, they give a clinician context.
What should I do next?
- Find out whether you carry it. Reading about a variant says nothing about you until you know your genotype.
- Put it in context. Add your blood results, so the variant can be read against what your body is doing.
- Ask questions. Dr. Hemsworth, our AI assistant, can explain this variant and your results in plain English.
- Take anything that worries you to a professional. A GP or genetic counsellor can order a confirmatory test and interpret it with your history.
This page is general information drawn from public research databases. It cannot diagnose anything, and it is not a substitute for advice from a doctor or genetic counsellor who knows your history.
Technical details
- dbSNP ID
- rs1133400
- Position
- chr10:132645884
Genome-wide association studies (20)
| Trait | Risk allele | OR / beta | P-value | Study |
|---|---|---|---|---|
| Sex hormone-binding globulin levels and heel estimated bone mineral density | — | — | 2E-51 | PubMed |
| Heel bone mineral density | A | β 0.031 | 1E-43 | PubMed |
| Heel bone mineral density | — | — | 4E-40 | PubMed |
| Heel bone mineral density | — | β 0.029 | 1E-32 | PubMed |
| Systolic blood pressure | A | OR 0.25 | 4E-20 | PubMed |
| Systolic blood pressure | G | OR 0.26 | 1E-18 | PubMed |
| Systolic blood pressure | A | OR 0.26 | 7E-18 | PubMed |
| Systolic blood pressure | A | β 0.014 | 4E-16 | PubMed |
| Systolic blood pressure | A | OR 0.25 | 1E-14 | PubMed |
| Systolic blood pressure (MTAG) | G | β 0.016 | 3E-14 | PubMed |
| Pulse pressure | A | OR 0.14 | 4E-14 | PubMed |
| Estimated glomerular filtration rate (creatinine, cystatin c) | G | β 0.018 | 4E-13 | PubMed |
| Pulse pressure | G | OR 0.15 | 1E-12 | PubMed |
| Metabolic syndrome | — | β 0.011 | 2E-12 | PubMed |
| Serum urate levels | A | β 0.02 | 3E-12 | PubMed |
| Triglyceride levels | — | — | 1E-11 | PubMed |
| Hematocrit | G | β 0.013 | 2E-11 | PubMed |
| Systolic blood pressure | — | — | 3E-11 | PubMed |
| Systolic blood pressure | A | OR 0.3 | 3E-11 | PubMed |
| Diastolic blood pressure | A | β 0.012 | 4E-11 | PubMed |
Sources
- dbSNP: rs1133400 — the reference record
- ClinVar — clinical interpretations submitted by laboratories
- SNPedia — community-written summaries
- GWAS Catalog — association studies