Genetic variant
rs10401969
rs10401969 is a single-letter difference in human DNA, on chromosome 19. Carrying it does not, on its own, mean you have or will develop any condition.
What is this?
Your DNA is a long sequence of four letters. At a few million positions, people commonly differ by a single letter; each of those positions is called a SNP (“snip”), and rs10401969 is the catalogue number of one of them. Which letters you carry there — one copy from each parent — is your genotype.
We hold only the basic reference record for this variant: its ID and position. Many catalogued variants have never been linked to anything.
Why might it matter?
ClinVar holds no clinical classification for this variant. That is the usual case: most catalogued variants have no known effect on health.
Do I have this variant?
If you have taken a consumer DNA test (23andMe, AncestryDNA and similar), you can download its raw data file and check. Create a free account, upload the file, and this page will show the letters you carry at rs10401969, if your test read this position.
Connect this with your blood results
A gene is a fixed instruction; a blood test shows what your body is doing now. CheckMyBloods reads the two side by side, so a variant can be set against the markers it could plausibly affect.
Blood markers do not diagnose a genetic condition, and a variant does not explain a blood result on its own. Together, with symptoms and family history, they give a clinician context.
What should I do next?
- Find out whether you carry it. Reading about a variant says nothing about you until you know your genotype.
- Put it in context. Add your blood results, so the variant can be read against what your body is doing.
- Ask questions. Dr. Hemsworth, our AI assistant, can explain this variant and your results in plain English.
- Take anything that worries you to a professional. A GP or genetic counsellor can order a confirmatory test and interpret it with your history.
This page is general information drawn from public research databases. It cannot diagnose anything, and it is not a substitute for advice from a doctor or genetic counsellor who knows your history.
Technical details
- dbSNP ID
- rs10401969
- Position
- chr19:19296909
Genome-wide association studies (20)
| Trait | Risk allele | OR / beta | P-value | Study |
|---|---|---|---|---|
| Cholesterol, total | C | OR 0.14 | 4E-77 | PubMed |
| Total cholesterol levels | T | OR 0.14 | 5E-75 | PubMed |
| Triglyceride levels | T | OR 0.12 | 5E-71 | PubMed |
| Triglycerides | C | OR 0.12 | 1E-69 | PubMed |
| LDL cholesterol | C | OR 0.12 | 3E-54 | PubMed |
| LDL cholesterol levels | T | OR 0.12 | 6E-51 | PubMed |
| Triglycerides | T | OR 0.14 | 1E-44 | PubMed |
| Cholesterol, total | C | OR 4.74 | 3E-38 | PubMed |
| C-reactive protein levels or triglyceride levels (pleiotropy) | T | — | 2E-32 | PubMed |
| Free cholesterol in IDL | C | β 0.04 | 8E-31 | PubMed |
| Total cholesterol levels | T | β 0.089 | 1E-29 | PubMed |
| Triglycerides | C | OR 7.83 | 2E-29 | PubMed |
| Triglycerides in chylomicrons and extremely large VLDL (UKB data field 23487) | C | β 0.087 | 9E-24 | PubMed |
| Nonalcoholic fatty liver disease | — | OR 0.27 | 2E-22 | PubMed |
| LDL cholesterol | C | OR 3.11 | 7E-22 | PubMed |
| Alanine transaminase levels in high alcohol intake | — | β 0.024 | 1E-18 | PubMed |
| Ratio of 18:2 linoleic acid to total fatty acids | T | β 0.062 | 2E-17 | PubMed |
| Beta-glucuronidase levels | T | OR 0.19 | 2E-16 | PubMed |
| Postprandial remnant cholesterol | C | OR 0.34 | 2E-16 | PubMed |
| Aspartate transaminase levels in high alcohol intake | — | β 0.016 | 3E-16 | PubMed |
Sources
- dbSNP: rs10401969 — the reference record
- ClinVar — clinical interpretations submitted by laboratories
- SNPedia — community-written summaries
- GWAS Catalog — association studies