SHANK3 Chromosome 22

SH3 and multiple ankyrin repeat domains 3
171 variants 171 Health Risk

Upload your DNA to see your personal genotypes for variants in SHANK3.

What This Gene Does
This gene is a member of the Shank gene family. Shank proteins are multidomain scaffold proteins of the postsynaptic density that connect neurotransmitter receptors, ion channels, and other membrane proteins to the actin cytoskeleton and G-protein-coupled signaling pathways. Shank proteins also play a role in synapse formation and dendritic spine maturation. Mutations in this gene are a cause of autism spectrum disorder (ASD), which is characterized by impairments in social interaction and communication, and restricted behavioral patterns and interests. Mutations in this gene also cause schizophrenia type 15, and are a major causative factor in the neurological symptoms of 22q13.3 deletion syndrome, which is also known as Phelan-McDermid syndrome. Additional isoforms have been described for this gene but they have not yet been experimentally verified. [provided by RefSeq, Mar 2012]
Gene Info
Gene Group
"Ankyrin repeat domain containing|Sterile alpha motif domain containing|PDZ domain containing"
Locus Type
gene with protein product
Location
22q13.33
Ensembl
ENSG00000251322
Associated Conditions (20)
Inborn genetic diseases
Congenital anomaly of kidney and urinary tract
Phelan-McDermid syndrome
SHANK3-related disorder
Schizophrenia 15
Neurodegeneration
Abnormal cerebral white matter morphology
Hyperammonemia
Intellectual disability
Psychotic disorder
Moderate global developmental delay
Mutism
Autism spectrum disorder
See cases
Neurodevelopmental delay
Autistic behavior
Neurodevelopmental abnormality
Seizure
Global developmental delay
Neurodevelopmental disorder
Key Variants
RS1037626168
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS1054399689
Conflicting classifications of pathogenicity
Inborn genetic diseases, Congenital anomaly of kidney and urinary tract, Inborn genetic diseases
Health Risk
RS1171230055
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS1216527991
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS1326735946
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS1440735830
Conflicting classifications of pathogenicity
Phelan-McDermid syndrome, Phelan-McDermid syndrome
Health Risk
RS1464985103
Conflicting classifications of pathogenicity
Inborn genetic diseases, SHANK3-related disorder, Inborn genetic diseases
Health Risk
RS181480774
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS188531567
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS2518393305
Conflicting classifications of pathogenicity
Phelan-McDermid syndrome, Phelan-McDermid syndrome
Health Risk
RS371565755
Conflicting classifications of pathogenicity
Inborn genetic diseases, SHANK3-related disorder, Inborn genetic diseases
Health Risk
RS530255181
Conflicting classifications of pathogenicity
Schizophrenia 15, Phelan-McDermid syndrome, Inborn genetic diseases
Health Risk
All Variants (171)
RSID Category Clinical Significance Conditions
RS1037626168 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS1054399689 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Congenital anomaly of kidney and urinary tract, Inborn genetic diseases
RS1171230055 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS1216527991 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS1326735946 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS1440735830 Health Risk Conflicting classifications of pathogenicity Phelan-McDermid syndrome, Phelan-McDermid syndrome
RS1464985103 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, SHANK3-related disorder, Inborn genetic diseases
RS181480774 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS188531567 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS2518393305 Health Risk Conflicting classifications of pathogenicity Phelan-McDermid syndrome, Phelan-McDermid syndrome
RS371565755 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, SHANK3-related disorder, Inborn genetic diseases
RS530255181 Health Risk Conflicting classifications of pathogenicity Schizophrenia 15, Phelan-McDermid syndrome, Inborn genetic diseases
RS565420289 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS573873623 Health Risk Conflicting classifications of pathogenicity
RS73174429 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, SHANK3-related disorder, Inborn genetic diseases
RS748123356 Health Risk Conflicting classifications of pathogenicity Phelan-McDermid syndrome, Phelan-McDermid syndrome
RS749130556 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS752227380 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS766205731 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS767058690 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, SHANK3-related disorder, Inborn genetic diseases
RS778640691 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, SHANK3-related disorder, Inborn genetic diseases
RS929358843 Health Risk Conflicting classifications of pathogenicity Phelan-McDermid syndrome, Phelan-McDermid syndrome
RS1057519406 Health Risk Likely pathogenic Phelan-McDermid syndrome, Phelan-McDermid syndrome
RS1064796528 Health Risk Likely pathogenic
RS1064797289 Health Risk Likely pathogenic
RS1064797290 Health Risk Likely pathogenic
RS1085307954 Health Risk Likely pathogenic
RS1131691463 Health Risk Likely pathogenic
RS1131691464 Health Risk Likely pathogenic
RS1131691469 Health Risk Likely pathogenic
RS1131691485 Health Risk Likely pathogenic
RS1555906705 Health Risk Likely pathogenic
RS1555908702 Health Risk Likely pathogenic
RS1555910193 Health Risk Likely pathogenic
RS1555910895 Health Risk Likely pathogenic
RS1555910948 Health Risk Likely pathogenic
RS1569116167 Health Risk Likely pathogenic
RS1569116595 Health Risk Likely pathogenic Inborn genetic diseases, Inborn genetic diseases
RS1603445997 Health Risk Likely pathogenic Phelan-McDermid syndrome, Phelan-McDermid syndrome
RS1603447111 Health Risk Likely pathogenic
RS1603447381 Health Risk Likely pathogenic
RS200400333 Health Risk Likely pathogenic Phelan-McDermid syndrome, Phelan-McDermid syndrome
RS2083140726 Health Risk Likely pathogenic Phelan-McDermid syndrome, Phelan-McDermid syndrome
RS2083280147 Health Risk Likely pathogenic Schizophrenia 15, Phelan-McDermid syndrome, Schizophrenia 15
RS2083297043 Health Risk Likely pathogenic
RS2083361660 Health Risk Likely pathogenic
RS2083362624 Health Risk Likely pathogenic Inborn genetic diseases, Inborn genetic diseases
RS2146817773 Health Risk Likely pathogenic Phelan-McDermid syndrome, Phelan-McDermid syndrome
RS2146830032 Health Risk Likely pathogenic
RS2146832853 Health Risk Likely pathogenic Phelan-McDermid syndrome, Phelan-McDermid syndrome
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