SCN1A Chromosome 2

Sodium voltage-gated channel alpha subunit 1
1884 variants 1 Drug Response 1883 Health Risk

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What This Gene Does
Voltage-dependent sodium channels are heteromeric complexes that regulate sodium exchange between intracellular and extracellular spaces and are essential for the generation and propagation of action potentials in muscle cells and neurons. Each sodium channel is composed of a large pore-forming, glycosylated alpha subunit and two smaller beta subunits. This gene encodes a sodium channel alpha subunit, which has four homologous domains, each of which contains six transmembrane regions. Allelic variants of this gene are associated with generalized epilepsy with febrile seizures and epileptic encephalopathy. Alternative splicing results in multiple transcript variants. The RefSeq Project has decided to create four representative RefSeq records. Three of the transcript variants are supported by experimental evidence and the fourth contains alternate 5' untranslated exons, the exact combination of which have not been experimentally confirmed for the full-length transcript. [provided by RefSeq, Oct 2015]
Gene Info
Gene Group
Sodium voltage-gated channel alpha subunits
Locus Type
gene with protein product
Location
2q24.3
Ensembl
ENSG00000144285
Associated Conditions (56)
Febrile seizures
familial
3a
carbamazepine response - Dosage
Early-infantile DEE
Inborn genetic diseases
Developmental and epileptic encephalopathy 6B
Migraine
familial hemiplegic
3
Generalized epilepsy with febrile seizures plus
type 2
SCN1A-related disorder
type 1
Severe myoclonic epilepsy in infancy
Focal epilepsy
Autosomal dominant epilepsy
Seizure
Developmental and epileptic encephalopathy
Bilateral tonic-clonic seizure
+36 more conditions
Key Variants
All Variants (1884)
RSID Category Clinical Significance Conditions
RS766418091 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS766503699 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS767045134 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Generalized epilepsy with febrile seizures plus, type 2
RS768638174 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS768736409 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS769477807 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS770111331 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS770462475 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS771936735 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Inborn genetic diseases, Early-infantile DEE
RS773681556 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS773695263 Health Risk Conflicting classifications of pathogenicity
RS774358847 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS774937055 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS775820803 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS776055539 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Developmental and epileptic encephalopathy 6B, Early-infantile DEE
RS776548109 Health Risk Conflicting classifications of pathogenicity Autosomal dominant epilepsy, Early-infantile DEE, Autosomal dominant epilepsy
RS776752552 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS777120925 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy 6B, Severe myoclonic epilepsy in infancy, Migraine
RS778620898 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS779306054 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS779561135 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS779614747 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Early-infantile DEE, Generalized epilepsy with febrile seizures plus
RS780340848 Health Risk Conflicting classifications of pathogenicity Developmental and epileptic encephalopathy 6B, Early-infantile DEE, Developmental and epileptic encephalopathy 6B
RS780360360 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS780391343 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS780607306 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS780809852 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Generalized epilepsy with febrile seizures plus, type 2
RS781505393 Health Risk Conflicting classifications of pathogenicity Migraine, familial hemiplegic, 3
RS794726746 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Severe myoclonic epilepsy in infancy
RS794726809 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Early-infantile DEE, Severe myoclonic epilepsy in infancy
RS794726811 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, SCN1A-related disorder, Early-infantile DEE
RS794726821 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Generalized epilepsy with febrile seizures plus, type 2
RS794726826 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Generalized epilepsy with febrile seizures plus, Early-infantile DEE
RS794727025 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS794727415 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS796052952 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS796052954 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS796052962 Health Risk Conflicting classifications of pathogenicity
RS796052986 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Early-infantile DEE
RS796052991 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Developmental and epileptic encephalopathy 6B, Early-infantile DEE
RS796052997 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS796053007 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS796053019 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Early-infantile DEE
RS796053035 Health Risk Conflicting classifications of pathogenicity Autosomal dominant epilepsy, Inborn genetic diseases, Generalized epilepsy with febrile seizures plus
RS796053037 Health Risk Conflicting classifications of pathogenicity See cases, Early-infantile DEE, See cases
RS796053042 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
RS796053049 Health Risk Conflicting classifications of pathogenicity Generalized epilepsy with febrile seizures plus, type 2, Early-infantile DEE
RS796053090 Health Risk Conflicting classifications of pathogenicity Severe myoclonic epilepsy in infancy, Early-infantile DEE, Severe myoclonic epilepsy in infancy
RS796053093 Health Risk Conflicting classifications of pathogenicity Early-infantile DEE, Early-infantile DEE
RS796053098 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Early-infantile DEE, Inborn genetic diseases
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