PIKFYVE Chromosome 2
Phosphoinositide kinase, FYVE-type zinc finger containing
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What This Gene Does
Phosphorylated derivatives of phosphatidylinositol (PtdIns) regulate cytoskeletal functions, membrane trafficking, and receptor signaling by recruiting protein complexes to cell- and endosomal-membranes. Humans have multiple PtdIns proteins that differ by the degree and position of phosphorylation of the inositol ring. This gene encodes an enzyme (PIKfyve; also known as phosphatidylinositol-3-phosphate 5-kinase type III or PIPKIII) that phosphorylates the D-5 position in PtdIns and phosphatidylinositol-3-phosphate (PtdIns3P) to make PtdIns5P and PtdIns(3,5)biphosphate. The D-5 position also can be phosphorylated by type I PtdIns4P-5-kinases (PIP5Ks) that are encoded by distinct genes and preferentially phosphorylate D-4 phosphorylated PtdIns. In contrast, PIKfyve preferentially phosphorylates D-3 phosphorylated PtdIns. In addition to being a lipid kinase, PIKfyve also has protein kinase activity. PIKfyve regulates endomembrane homeostasis and plays a role in the biogenesis of endosome carrier vesicles from early endosomes. The protein plays a key role in cell entry of ebola virus and SARS-CoV-2 by endocytosis Mutations in this gene cause corneal fleck dystrophy (CFD); an autosomal dominant disorder characterized by numerous small white flecks present in all layers of the corneal stroma. Histologically, these flecks appear to be keratocytes distended with lipid and mucopolysaccharide filled intracytoplasmic vacuoles. [provided by RefSeq, Jul 2021]
Gene Info
Gene Group
"Zinc fingers FYVE-type|DEP domain containing"
Locus Type
gene with protein product
Location
2q34
Ensembl
ENSG00000115020
Associated Conditions (3)
Fleck corneal dystrophy
Inborn genetic diseases
PIKFYVE-related disorder
Key Variants
RS144573813
Conflicting classifications of pathogenicity
Fleck corneal dystrophy, Fleck corneal dystrophy
Health Risk
RS144852646
Conflicting classifications of pathogenicity
Fleck corneal dystrophy, Inborn genetic diseases, Fleck corneal dystrophy
Health Risk
RS146673873
Conflicting classifications of pathogenicity
Fleck corneal dystrophy, Inborn genetic diseases, Fleck corneal dystrophy
Health Risk
RS373802805
Conflicting classifications of pathogenicity
Fleck corneal dystrophy, Inborn genetic diseases, Fleck corneal dystrophy
Health Risk
RS376604887
Conflicting classifications of pathogenicity
Fleck corneal dystrophy, Inborn genetic diseases, Fleck corneal dystrophy
Health Risk
RS377372888
Conflicting classifications of pathogenicity
Fleck corneal dystrophy, Fleck corneal dystrophy
Health Risk
RS767989671
Conflicting classifications of pathogenicity
Fleck corneal dystrophy, Inborn genetic diseases, Fleck corneal dystrophy
Health Risk
RS778006745
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS1189539018
Likely pathogenic
Health Risk
RS1195336213
Likely pathogenic
Fleck corneal dystrophy, Fleck corneal dystrophy
Health Risk
RS1291587960
Likely pathogenic
PIKFYVE-related disorder, PIKFYVE-related disorder
Health Risk
RS1450294572
Likely pathogenic
PIKFYVE-related disorder, PIKFYVE-related disorder
Health Risk
All Variants (26)
| RSID | Category | Clinical Significance | Conditions |
|---|---|---|---|
| RS144573813 | Health Risk | Conflicting classifications of pathogenicity | Fleck corneal dystrophy, Fleck corneal dystrophy |
| RS144852646 | Health Risk | Conflicting classifications of pathogenicity | Fleck corneal dystrophy, Inborn genetic diseases, Fleck corneal dystrophy |
| RS146673873 | Health Risk | Conflicting classifications of pathogenicity | Fleck corneal dystrophy, Inborn genetic diseases, Fleck corneal dystrophy |
| RS373802805 | Health Risk | Conflicting classifications of pathogenicity | Fleck corneal dystrophy, Inborn genetic diseases, Fleck corneal dystrophy |
| RS376604887 | Health Risk | Conflicting classifications of pathogenicity | Fleck corneal dystrophy, Inborn genetic diseases, Fleck corneal dystrophy |
| RS377372888 | Health Risk | Conflicting classifications of pathogenicity | Fleck corneal dystrophy, Fleck corneal dystrophy |
| RS767989671 | Health Risk | Conflicting classifications of pathogenicity | Fleck corneal dystrophy, Inborn genetic diseases, Fleck corneal dystrophy |
| RS778006745 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, Inborn genetic diseases |
| RS1189539018 | Health Risk | Likely pathogenic | — |
| RS1195336213 | Health Risk | Likely pathogenic | Fleck corneal dystrophy, Fleck corneal dystrophy |
| RS1291587960 | Health Risk | Likely pathogenic | PIKFYVE-related disorder, PIKFYVE-related disorder |
| RS1450294572 | Health Risk | Likely pathogenic | PIKFYVE-related disorder, PIKFYVE-related disorder |
| RS1696928201 | Health Risk | Likely pathogenic | — |
| RS1699994369 | Health Risk | Likely pathogenic | — |
| RS2125298689 | Health Risk | Likely pathogenic | Fleck corneal dystrophy, Fleck corneal dystrophy |
| RS780579562 | Health Risk | Likely pathogenic | Fleck corneal dystrophy, Fleck corneal dystrophy |
| RS1003590403 | Health Risk | Pathogenic | — |
| RS1011857582 | Health Risk | Pathogenic | PIKFYVE-related disorder, PIKFYVE-related disorder |
| RS121918336 | Health Risk | Pathogenic | Fleck corneal dystrophy, Fleck corneal dystrophy |
| RS121918337 | Health Risk | Pathogenic | Fleck corneal dystrophy, Fleck corneal dystrophy |
| RS2125682287 | Health Risk | Pathogenic | — |
| RS2125682979 | Health Risk | Pathogenic | Fleck corneal dystrophy, Fleck corneal dystrophy |
| RS387907335 | Health Risk | Pathogenic | Fleck corneal dystrophy, Fleck corneal dystrophy |
| RS869312464 | Health Risk | Pathogenic | Fleck corneal dystrophy, Fleck corneal dystrophy |
| RS992128517 | Health Risk | Pathogenic | Fleck corneal dystrophy, Fleck corneal dystrophy |
| RS1553525857 | Health Risk | Pathogenic/Likely pathogenic | — |