NPHP1 Chromosome 2

Nephrocystin 1
157 variants 157 Health Risk

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What This Gene Does
This gene encodes a protein with src homology domain 3 (SH3) patterns. This protein interacts with Crk-associated substrate, and it appears to function in the control of cell division, as well as in cell-cell and cell-matrix adhesion signaling, likely as part of a multifunctional complex localized in actin- and microtubule-based structures. Mutations in this gene cause familial juvenile nephronophthisis type 1, a kidney disorder involving both tubules and glomeruli. Defects in this gene are also associated with Senior-Loken syndrome type 1, also referred to as juvenile nephronophthisis with Leber amaurosis, which is characterized by kidney and eye disease, and with Joubert syndrome type 4, which is characterized by cerebellar ataxia, oculomotor apraxia, psychomotor delay and neonatal breathing abnormalities, sometimes including retinal dystrophy and renal disease. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
Gene Info
Gene Group
NPHP complex
Locus Type
gene with protein product
Location
2q13
Ensembl
ENSG00000144061
Associated Conditions (15)
Nephronophthisis 1
Joubert syndrome with renal defect
Senior-Loken syndrome 1
Retinal dystrophy
Nephronophthisis
NPHP1-related disorder
Inborn genetic diseases
Joubert syndrome and related disorders
Leber congenital amaurosis
Thyroid cancer
nonmedullary
1
Ovarian serous cystadenocarcinoma
Clear cell carcinoma of kidney
Congenital anomaly of kidney and urinary tract
Key Variants
RS114250691
Conflicting classifications of pathogenicity
Nephronophthisis 1, Joubert syndrome with renal defect, Senior-Loken syndrome 1
Health Risk
RS1253817401
Conflicting classifications of pathogenicity
Nephronophthisis, Nephronophthisis
Health Risk
RS1266229950
Conflicting classifications of pathogenicity
Nephronophthisis, Nephronophthisis 1, Joubert syndrome with renal defect
Health Risk
RS1280756117
Conflicting classifications of pathogenicity
Nephronophthisis, NPHP1-related disorder, Nephronophthisis
Health Risk
RS1365022834
Conflicting classifications of pathogenicity
Joubert syndrome with renal defect, Nephronophthisis 1, Senior-Loken syndrome 1
Health Risk
RS139787582
Conflicting classifications of pathogenicity
Joubert syndrome with renal defect, Nephronophthisis, Senior-Loken syndrome 1
Health Risk
RS140151060
Conflicting classifications of pathogenicity
Nephronophthisis, Inborn genetic diseases, NPHP1-related disorder
Health Risk
RS140446520
Conflicting classifications of pathogenicity
Nephronophthisis, Joubert syndrome with renal defect, Senior-Loken syndrome 1
Health Risk
RS140469160
Conflicting classifications of pathogenicity
Senior-Loken syndrome 1, Joubert syndrome with renal defect, Nephronophthisis
Health Risk
RS141763330
Conflicting classifications of pathogenicity
Senior-Loken syndrome 1, Nephronophthisis, Joubert syndrome with renal defect
Health Risk
RS143163969
Conflicting classifications of pathogenicity
Joubert syndrome with renal defect, Senior-Loken syndrome 1, Nephronophthisis 1
Health Risk
RS144217506
Conflicting classifications of pathogenicity
Nephronophthisis, Nephronophthisis
Health Risk
All Variants (157)
RSID Category Clinical Significance Conditions
RS114250691 Health Risk Conflicting classifications of pathogenicity Nephronophthisis 1, Joubert syndrome with renal defect, Senior-Loken syndrome 1
RS1253817401 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Nephronophthisis
RS1266229950 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Nephronophthisis 1, Joubert syndrome with renal defect
RS1280756117 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, NPHP1-related disorder, Nephronophthisis
RS1365022834 Health Risk Conflicting classifications of pathogenicity Joubert syndrome with renal defect, Nephronophthisis 1, Senior-Loken syndrome 1
RS139787582 Health Risk Conflicting classifications of pathogenicity Joubert syndrome with renal defect, Nephronophthisis, Senior-Loken syndrome 1
RS140151060 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Inborn genetic diseases, NPHP1-related disorder
RS140446520 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Joubert syndrome with renal defect, Senior-Loken syndrome 1
RS140469160 Health Risk Conflicting classifications of pathogenicity Senior-Loken syndrome 1, Joubert syndrome with renal defect, Nephronophthisis
RS141763330 Health Risk Conflicting classifications of pathogenicity Senior-Loken syndrome 1, Nephronophthisis, Joubert syndrome with renal defect
RS143163969 Health Risk Conflicting classifications of pathogenicity Joubert syndrome with renal defect, Senior-Loken syndrome 1, Nephronophthisis 1
RS144217506 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Nephronophthisis
RS144850331 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, NPHP1-related disorder, Nephronophthisis
RS1473345628 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Nephronophthisis 1, Joubert syndrome with renal defect
RS147945403 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, NPHP1-related disorder, Joubert syndrome with renal defect
RS149887461 Health Risk Conflicting classifications of pathogenicity Senior-Loken syndrome 1, Joubert syndrome with renal defect, Nephronophthisis
RS150520157 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Joubert syndrome with renal defect, Nephronophthisis 1
RS151204566 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Joubert syndrome with renal defect, Nephronophthisis 1
RS186950965 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Inborn genetic diseases, Nephronophthisis
RS189320299 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Nephronophthisis 1, Joubert syndrome with renal defect
RS189472793 Health Risk Conflicting classifications of pathogenicity Joubert syndrome with renal defect, Nephronophthisis 1, Senior-Loken syndrome 1
RS200118387 Health Risk Conflicting classifications of pathogenicity Leber congenital amaurosis, Joubert syndrome with renal defect, Nephronophthisis 1
RS201460699 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Nephronophthisis 1, Senior-Loken syndrome 1
RS201478764 Health Risk Conflicting classifications of pathogenicity Nephronophthisis 1, Joubert syndrome with renal defect, Senior-Loken syndrome 1
RS2467258975 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Joubert syndrome with renal defect, Nephronophthisis 1
RS368025611 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Inborn genetic diseases, Senior-Loken syndrome 1
RS368590150 Health Risk Conflicting classifications of pathogenicity Nephronophthisis 1, Joubert syndrome with renal defect, Senior-Loken syndrome 1
RS371112962 Health Risk Conflicting classifications of pathogenicity Joubert syndrome with renal defect, Nephronophthisis, Senior-Loken syndrome 1
RS373915635 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, NPHP1-related disorder, Nephronophthisis
RS373951297 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Joubert syndrome with renal defect, Nephronophthisis 1
RS375907280 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Inborn genetic diseases, Nephronophthisis 1
RS398123286 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Nephronophthisis
RS567306113 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Retinal dystrophy, Nephronophthisis
RS573192954 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Inborn genetic diseases, Nephronophthisis
RS577070620 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Inborn genetic diseases, Nephronophthisis
RS749606788 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Nephronophthisis
RS750113370 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Nephronophthisis
RS751388694 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Nephronophthisis
RS763004817 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, NPHP1-related disorder, Nephronophthisis
RS767719020 Health Risk Conflicting classifications of pathogenicity Joubert syndrome with renal defect, Senior-Loken syndrome 1, Nephronophthisis 1
RS767903893 Health Risk Conflicting classifications of pathogenicity Nephronophthisis 1, Senior-Loken syndrome 1, Joubert syndrome with renal defect
RS774162169 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, NPHP1-related disorder, Senior-Loken syndrome 1
RS777574728 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Inborn genetic diseases, NPHP1-related disorder
RS777677768 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Senior-Loken syndrome 1, Joubert syndrome with renal defect
RS779032904 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, NPHP1-related disorder, Nephronophthisis
RS779083426 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Inborn genetic diseases, Nephronophthisis
RS780427871 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Joubert syndrome with renal defect, Nephronophthisis 1
RS794726975 Health Risk Conflicting classifications of pathogenicity Nephronophthisis, Nephronophthisis 1, Senior-Loken syndrome 1
RS886054755 Health Risk Conflicting classifications of pathogenicity Senior-Loken syndrome 1, Nephronophthisis 1, Joubert syndrome with renal defect
RS1171179496 Health Risk Likely pathogenic Nephronophthisis, Nephronophthisis
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