LAMC2 Chromosome 1

Laminin subunit gamma 2
235 variants 235 Health Risk

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What This Gene Does
Laminins, a family of extracellular matrix glycoproteins, are the major noncollagenous constituent of basement membranes. They have been implicated in a wide variety of biological processes including cell adhesion, differentiation, migration, signaling, neurite outgrowth and metastasis. Laminins, composed of 3 non identical chains: laminin alpha, beta and gamma (formerly A, B1, and B2, respectively), have a cruciform structure consisting of 3 short arms, each formed by a different chain, and a long arm composed of all 3 chains. Each laminin chain is a multidomain protein encoded by a distinct gene. Several isoforms of each chain have been described. Different alpha, beta and gamma chain isomers combine to give rise to different heterotrimeric laminin isoforms which are designated by Arabic numerals in the order of their discovery, i.e. alpha1beta1gamma1 heterotrimer is laminin 1. The biological functions of the different chains and trimer molecules are largely unknown, but some of the chains have been shown to differ with respect to their tissue distribution, presumably reflecting diverse functions in vivo. This gene encodes the gamma chain isoform laminin, gamma 2. The gamma 2 chain, formerly thought to be a truncated version of beta chain (B2t), is highly homologous to the gamma 1 chain; however, it lacks domain VI, and domains V, IV and III are shorter. It is expressed in several fetal tissues but differently from gamma 1, and is specifically localized to epithelial cells in skin, lung and kidney. The gamma 2 chain together with alpha 3 and beta 3 chains constitute laminin 5 (earlier known as kalinin), which is an integral part of the anchoring filaments that connect epithelial cells to the underlying basement membrane. The epithelium-specific expression of the gamma 2 chain implied its role as an epithelium attachment molecule, and mutations in this gene have been associated with junctional epidermolysis bullosa, a skin disease characterized by blisters due to disruption of the epidermal-dermal junction. Two transcript variants resulting from alternative splicing of the 3' terminal exon, and encoding different isoforms of gamma 2 chain, have been described. The two variants are differentially expressed in embryonic tissues, however, the biological significance of the two forms is not known. Transcript variants utilizing alternative polyA_signal have also been noted in literature. [provided by RefSeq, Aug 2011]
Gene Info
Gene Group
Laminin subunits
Locus Type
gene with protein product
Location
1q25.3
Ensembl
ENSG00000058085
Associated Conditions (15)
Junctional epidermolysis bullosa
LAMC2-related disorder
Junctional epidermolysis bullosa gravis of Herlitz
Epidermolysis bullosa
junctional 3A
intermediate
junctional 3B
severe
Inborn genetic diseases
Amelogenesis imperfecta type 1
non-Herlitz type
Thyroid cancer
nonmedullary
1
Abnormality of the skin
Key Variants
RS138266625
Conflicting classifications of pathogenicity
Junctional epidermolysis bullosa, LAMC2-related disorder, Junctional epidermolysis bullosa
Health Risk
RS138728557
Conflicting classifications of pathogenicity
Junctional epidermolysis bullosa, Junctional epidermolysis bullosa
Health Risk
RS139718245
Conflicting classifications of pathogenicity
Junctional epidermolysis bullosa, LAMC2-related disorder, Junctional epidermolysis bullosa
Health Risk
RS140649374
Conflicting classifications of pathogenicity
Junctional epidermolysis bullosa, LAMC2-related disorder, Junctional epidermolysis bullosa
Health Risk
RS140949383
Conflicting classifications of pathogenicity
Junctional epidermolysis bullosa, Junctional epidermolysis bullosa gravis of Herlitz, LAMC2-related disorder
Health Risk
RS141806165
Conflicting classifications of pathogenicity
Junctional epidermolysis bullosa, LAMC2-related disorder, Inborn genetic diseases
Health Risk
RS141812464
Conflicting classifications of pathogenicity
Junctional epidermolysis bullosa, Junctional epidermolysis bullosa gravis of Herlitz, LAMC2-related disorder
Health Risk
RS141901570
Conflicting classifications of pathogenicity
Junctional epidermolysis bullosa, LAMC2-related disorder, Junctional epidermolysis bullosa
Health Risk
RS142335339
Conflicting classifications of pathogenicity
Junctional epidermolysis bullosa, Amelogenesis imperfecta type 1, LAMC2-related disorder
Health Risk
RS143817389
Conflicting classifications of pathogenicity
LAMC2-related disorder, Junctional epidermolysis bullosa gravis of Herlitz, Epidermolysis bullosa
Health Risk
RS145811533
Conflicting classifications of pathogenicity
Junctional epidermolysis bullosa, Junctional epidermolysis bullosa
Health Risk
RS146325169
Conflicting classifications of pathogenicity
Junctional epidermolysis bullosa, non-Herlitz type, Junctional epidermolysis bullosa
Health Risk
All Variants (235)
RSID Category Clinical Significance Conditions
RS1659229440 Health Risk Pathogenic Junctional epidermolysis bullosa, Junctional epidermolysis bullosa
RS1659523218 Health Risk Pathogenic
RS1659531274 Health Risk Pathogenic
RS1659639440 Health Risk Pathogenic
RS1659639732 Health Risk Pathogenic
RS1659669242 Health Risk Pathogenic
RS1659782625 Health Risk Pathogenic
RS1659819062 Health Risk Pathogenic
RS1659834817 Health Risk Pathogenic Junctional epidermolysis bullosa, Junctional epidermolysis bullosa
RS1659930803 Health Risk Pathogenic
RS1660171997 Health Risk Pathogenic Junctional epidermolysis bullosa, Junctional epidermolysis bullosa
RS200783718 Health Risk Pathogenic Junctional epidermolysis bullosa, non-Herlitz type, Junctional epidermolysis bullosa
RS201307156 Health Risk Pathogenic Junctional epidermolysis bullosa gravis of Herlitz, Junctional epidermolysis bullosa, non-Herlitz type
RS2102196403 Health Risk Pathogenic Epidermolysis bullosa, junctional 3B, severe
RS2102196755 Health Risk Pathogenic
RS2102222177 Health Risk Pathogenic
RS2102222351 Health Risk Pathogenic
RS2102222423 Health Risk Pathogenic
RS2102228165 Health Risk Pathogenic
RS2102228301 Health Risk Pathogenic Junctional epidermolysis bullosa, non-Herlitz type, Junctional epidermolysis bullosa
RS2102228390 Health Risk Pathogenic Junctional epidermolysis bullosa gravis of Herlitz, Junctional epidermolysis bullosa gravis of Herlitz
RS2102230512 Health Risk Pathogenic
RS2102231460 Health Risk Pathogenic Epidermolysis bullosa, junctional 3B, severe
RS2102233137 Health Risk Pathogenic
RS2102233308 Health Risk Pathogenic
RS2102237469 Health Risk Pathogenic
RS2102239935 Health Risk Pathogenic
RS2102245341 Health Risk Pathogenic
RS2102245377 Health Risk Pathogenic
RS2102247050 Health Risk Pathogenic
RS2102247202 Health Risk Pathogenic
RS2102248662 Health Risk Pathogenic
RS2102250197 Health Risk Pathogenic
RS2102253629 Health Risk Pathogenic
RS2102258267 Health Risk Pathogenic Junctional epidermolysis bullosa, non-Herlitz type, Junctional epidermolysis bullosa
RS2526020363 Health Risk Pathogenic
RS2526020778 Health Risk Pathogenic
RS2526032198 Health Risk Pathogenic
RS2526037804 Health Risk Pathogenic
RS2526054200 Health Risk Pathogenic
RS2526060515 Health Risk Pathogenic
RS2526060814 Health Risk Pathogenic
RS2526069963 Health Risk Pathogenic
RS2526082974 Health Risk Pathogenic
RS2526088227 Health Risk Pathogenic
RS2526091818 Health Risk Pathogenic
RS2526100332 Health Risk Pathogenic
RS2526107661 Health Risk Pathogenic
RS2526108627 Health Risk Pathogenic
RS2526108690 Health Risk Pathogenic
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