COL1A1 Chromosome 17

Collagen type I alpha 1 chain
1224 variants 1224 Health Risk

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What This Gene Does
This gene encodes the pro-alpha1 chains of type I collagen whose triple helix comprises two alpha1 chains and one alpha2 chain. Type I is a fibril-forming collagen found in most connective tissues and is abundant in bone, cornea, dermis and tendon. Mutations in this gene are associated with osteogenesis imperfecta types I-IV, Ehlers-Danlos syndrome type VIIA, Ehlers-Danlos syndrome Classical type, Caffey Disease and idiopathic osteoporosis. Reciprocal translocations between chromosomes 17 and 22, where this gene and the gene for platelet-derived growth factor beta are located, are associated with a particular type of skin tumor called dermatofibrosarcoma protuberans, resulting from unregulated expression of the growth factor. Two transcripts, resulting from the use of alternate polyadenylation signals, have been identified for this gene. [provided by R. Dalgleish, Feb 2008]
Gene Info
Gene Group
Fibrillar collagens
Locus Type
gene with protein product
Location
17q21.33
Ensembl
ENSG00000108821
Associated Conditions (67)
Bone mineral density variation quantitative trait locus
Osteogenesis imperfecta type I
Cardiovascular phenotype
Osteogenesis imperfecta
Infantile cortical hyperostosis
Ehlers-Danlos syndrome
arthrochalasia type
See cases
COL1A1-related disorder
Connective tissue disorder
2
Familial thoracic aortic aneurysm and aortic dissection
8 conditions
7 conditions
Hypertrophic cardiomyopathy
Keratoconus
Osteogenesis imperfecta with normal sclerae
dominant form
Colon adenocarcinoma
Familial cancer of breast
+47 more conditions
Key Variants
RS1107946
association
Bone mineral density variation quantitative trait locus, Bone mineral density variation quantitative trait locus
Health Risk
RS11327935
association
Bone mineral density variation quantitative trait locus, Bone mineral density variation quantitative trait locus
Health Risk
RS1800012
association
Bone mineral density variation quantitative trait locus, Bone mineral density variation quantitative trait locus
Health Risk
RS1009435359
Conflicting classifications of pathogenicity
Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
Health Risk
RS1014402681
Conflicting classifications of pathogenicity
Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
Health Risk
RS1033263382
Conflicting classifications of pathogenicity
Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
Health Risk
RS1051473344
Conflicting classifications of pathogenicity
Osteogenesis imperfecta type I, Osteogenesis imperfecta, Infantile cortical hyperostosis
Health Risk
RS1061970
Conflicting classifications of pathogenicity
Infantile cortical hyperostosis, Ehlers-Danlos syndrome, arthrochalasia type
Health Risk
RS113950465
Conflicting classifications of pathogenicity
Osteogenesis imperfecta, Osteogenesis imperfecta type I, Cardiovascular phenotype
Health Risk
RS115997082
Conflicting classifications of pathogenicity
Ehlers-Danlos syndrome, arthrochalasia type, Infantile cortical hyperostosis
Health Risk
RS117672175
Conflicting classifications of pathogenicity
Osteogenesis imperfecta, Ehlers-Danlos syndrome, arthrochalasia type
Health Risk
RS1176922412
Conflicting classifications of pathogenicity
Cardiovascular phenotype, Osteogenesis imperfecta type I, Cardiovascular phenotype
Health Risk
All Variants (1224)
RSID Category Clinical Significance Conditions
RS764381074 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, COL1A1-related disorder, Cardiovascular phenotype
RS764594515 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS764910205 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS764989002 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS765154255 Health Risk Conflicting classifications of pathogenicity Ehlers-Danlos syndrome, arthrochalasia type, Infantile cortical hyperostosis
RS765450816 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Ehlers-Danlos syndrome, Osteogenesis imperfecta type I
RS766204229 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS766461654 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Ehlers-Danlos syndrome, arthrochalasia type
RS767525556 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta, Ehlers-Danlos syndrome, arthrochalasia type
RS768808806 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, COL1A1-related disorder
RS769106952 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta, Osteogenesis imperfecta type I
RS769158560 Health Risk Conflicting classifications of pathogenicity Cardiovascular phenotype, Osteogenesis imperfecta type I, Cardiovascular phenotype
RS769571473 Health Risk Conflicting classifications of pathogenicity Connective tissue disorder, Osteogenesis imperfecta type I, Ehlers-Danlos syndrome
RS769619568 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS769791947 Health Risk Conflicting classifications of pathogenicity Ehlers-Danlos syndrome, COL1A1-related disorder, Osteogenesis imperfecta type I
RS769867566 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS770568983 Health Risk Conflicting classifications of pathogenicity Infantile cortical hyperostosis, Ehlers-Danlos syndrome, arthrochalasia type
RS771918127 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Ehlers-Danlos syndrome, Osteogenesis imperfecta type I
RS772929903 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Ehlers-Danlos syndrome, classic type
RS773343407 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS774001209 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, COL1A1-related disorder
RS774034198 Health Risk Conflicting classifications of pathogenicity Ehlers-Danlos syndrome, arthrochalasia type, Infantile cortical hyperostosis
RS774045142 Health Risk Conflicting classifications of pathogenicity Cardiovascular phenotype, Osteogenesis imperfecta type I, Cardiovascular phenotype
RS774708577 Health Risk Conflicting classifications of pathogenicity Ehlers-Danlos syndrome, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS775095655 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Infantile cortical hyperostosis, Osteogenesis imperfecta
RS775208392 Health Risk Conflicting classifications of pathogenicity Cardiovascular phenotype, Osteogenesis imperfecta type I, Cardiovascular phenotype
RS776229611 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta, Ehlers-Danlos syndrome
RS776387246 Health Risk Conflicting classifications of pathogenicity Ehlers-Danlos syndrome, arthrochalasia type, Infantile cortical hyperostosis
RS776596093 Health Risk Conflicting classifications of pathogenicity Cardiovascular phenotype, Osteogenesis imperfecta type I, Cardiovascular phenotype
RS777150332 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS777265470 Health Risk Conflicting classifications of pathogenicity Connective tissue disorder, Osteogenesis imperfecta type I, Cardiovascular phenotype
RS777589249 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS777989389 Health Risk Conflicting classifications of pathogenicity Cardiovascular phenotype, Osteogenesis imperfecta type I, Cardiovascular phenotype
RS778077946 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS778417218 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Ehlers-Danlos syndrome, Cardiovascular phenotype
RS778733293 Health Risk Conflicting classifications of pathogenicity Connective tissue disorder, Osteogenesis imperfecta type I, Connective tissue disorder
RS779002822 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS779337831 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, COL1A1-related disorder
RS779767483 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS779846520 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, 8 conditions
RS780242725 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Ehlers-Danlos syndrome
RS780422688 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS780472683 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS780905804 Health Risk Conflicting classifications of pathogenicity Cardiovascular phenotype, Osteogenesis imperfecta type I, Cardiovascular phenotype
RS781491172 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Infantile cortical hyperostosis, Osteogenesis imperfecta
RS781614679 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS794727663 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS866785621 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, COL1A1-related disorder, Osteogenesis imperfecta type I
RS879355791 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS899337697 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
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