COL1A1 Chromosome 17

Collagen type I alpha 1 chain
1224 variants 1224 Health Risk

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What This Gene Does
This gene encodes the pro-alpha1 chains of type I collagen whose triple helix comprises two alpha1 chains and one alpha2 chain. Type I is a fibril-forming collagen found in most connective tissues and is abundant in bone, cornea, dermis and tendon. Mutations in this gene are associated with osteogenesis imperfecta types I-IV, Ehlers-Danlos syndrome type VIIA, Ehlers-Danlos syndrome Classical type, Caffey Disease and idiopathic osteoporosis. Reciprocal translocations between chromosomes 17 and 22, where this gene and the gene for platelet-derived growth factor beta are located, are associated with a particular type of skin tumor called dermatofibrosarcoma protuberans, resulting from unregulated expression of the growth factor. Two transcripts, resulting from the use of alternate polyadenylation signals, have been identified for this gene. [provided by R. Dalgleish, Feb 2008]
Gene Info
Gene Group
Fibrillar collagens
Locus Type
gene with protein product
Location
17q21.33
Ensembl
ENSG00000108821
Associated Conditions (67)
Bone mineral density variation quantitative trait locus
Osteogenesis imperfecta type I
Cardiovascular phenotype
Osteogenesis imperfecta
Infantile cortical hyperostosis
Ehlers-Danlos syndrome
arthrochalasia type
See cases
COL1A1-related disorder
Connective tissue disorder
2
Familial thoracic aortic aneurysm and aortic dissection
8 conditions
7 conditions
Hypertrophic cardiomyopathy
Keratoconus
Osteogenesis imperfecta with normal sclerae
dominant form
Colon adenocarcinoma
Familial cancer of breast
+47 more conditions
Key Variants
RS1107946
association
Bone mineral density variation quantitative trait locus, Bone mineral density variation quantitative trait locus
Health Risk
RS11327935
association
Bone mineral density variation quantitative trait locus, Bone mineral density variation quantitative trait locus
Health Risk
RS1800012
association
Bone mineral density variation quantitative trait locus, Bone mineral density variation quantitative trait locus
Health Risk
RS1009435359
Conflicting classifications of pathogenicity
Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
Health Risk
RS1014402681
Conflicting classifications of pathogenicity
Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
Health Risk
RS1033263382
Conflicting classifications of pathogenicity
Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
Health Risk
RS1051473344
Conflicting classifications of pathogenicity
Osteogenesis imperfecta type I, Osteogenesis imperfecta, Infantile cortical hyperostosis
Health Risk
RS1061970
Conflicting classifications of pathogenicity
Infantile cortical hyperostosis, Ehlers-Danlos syndrome, arthrochalasia type
Health Risk
RS113950465
Conflicting classifications of pathogenicity
Osteogenesis imperfecta, Osteogenesis imperfecta type I, Cardiovascular phenotype
Health Risk
RS115997082
Conflicting classifications of pathogenicity
Ehlers-Danlos syndrome, arthrochalasia type, Infantile cortical hyperostosis
Health Risk
RS117672175
Conflicting classifications of pathogenicity
Osteogenesis imperfecta, Ehlers-Danlos syndrome, arthrochalasia type
Health Risk
RS1176922412
Conflicting classifications of pathogenicity
Cardiovascular phenotype, Osteogenesis imperfecta type I, Cardiovascular phenotype
Health Risk
All Variants (1224)
RSID Category Clinical Significance Conditions
RS1107946 Health Risk association Bone mineral density variation quantitative trait locus, Bone mineral density variation quantitative trait locus
RS11327935 Health Risk association Bone mineral density variation quantitative trait locus, Bone mineral density variation quantitative trait locus
RS1800012 Health Risk association Bone mineral density variation quantitative trait locus, Bone mineral density variation quantitative trait locus
RS1009435359 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS1014402681 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS1033263382 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS1051473344 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta, Infantile cortical hyperostosis
RS1061970 Health Risk Conflicting classifications of pathogenicity Infantile cortical hyperostosis, Ehlers-Danlos syndrome, arthrochalasia type
RS113950465 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta, Osteogenesis imperfecta type I, Cardiovascular phenotype
RS115997082 Health Risk Conflicting classifications of pathogenicity Ehlers-Danlos syndrome, arthrochalasia type, Infantile cortical hyperostosis
RS117672175 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta, Ehlers-Danlos syndrome, arthrochalasia type
RS1176922412 Health Risk Conflicting classifications of pathogenicity Cardiovascular phenotype, Osteogenesis imperfecta type I, Cardiovascular phenotype
RS1199013401 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS1207868159 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS1215940390 Health Risk Conflicting classifications of pathogenicity Connective tissue disorder, Osteogenesis imperfecta type I, Cardiovascular phenotype
RS1267688094 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS1268011878 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS1273349782 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS1273874412 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS1279465588 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS1293214060 Health Risk Conflicting classifications of pathogenicity
RS1319157667 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS1349721736 Health Risk Conflicting classifications of pathogenicity
RS137987935 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS138164489 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS138557594 Health Risk Conflicting classifications of pathogenicity Infantile cortical hyperostosis, Ehlers-Danlos syndrome, arthrochalasia type
RS138749826 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Ehlers-Danlos syndrome, Osteogenesis imperfecta type I
RS1391247648 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS139593707 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I, Ehlers-Danlos syndrome
RS139955975 Health Risk Conflicting classifications of pathogenicity Infantile cortical hyperostosis, Ehlers-Danlos syndrome, arthrochalasia type
RS1402759053 Health Risk Conflicting classifications of pathogenicity Cardiovascular phenotype, Osteogenesis imperfecta type I, Cardiovascular phenotype
RS1407160641 Health Risk Conflicting classifications of pathogenicity Cardiovascular phenotype, Osteogenesis imperfecta type I, Cardiovascular phenotype
RS1409382717 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS141011435 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I, COL1A1-related disorder
RS141117382 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS1411750377 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS1414204760 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS1424117367 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
RS142570406 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta, Cardiovascular phenotype
RS144751329 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS144820445 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, See cases, Cardiovascular phenotype
RS145251615 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, 8 conditions, Cardiovascular phenotype
RS1457362728 Health Risk Conflicting classifications of pathogenicity Cardiovascular phenotype, Osteogenesis imperfecta type I, Cardiovascular phenotype
RS146035171 Health Risk Conflicting classifications of pathogenicity 7 conditions, Osteogenesis imperfecta type I, Cardiovascular phenotype
RS146899953 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta, Osteogenesis imperfecta
RS147104425 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Cardiovascular phenotype, Osteogenesis imperfecta type I
RS147936946 Health Risk Conflicting classifications of pathogenicity Connective tissue disorder, Osteogenesis imperfecta type I, Ehlers-Danlos syndrome
RS148131473 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta, Infantile cortical hyperostosis, Ehlers-Danlos syndrome
RS148216434 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Infantile cortical hyperostosis, Ehlers-Danlos syndrome
RS1484351533 Health Risk Conflicting classifications of pathogenicity Osteogenesis imperfecta type I, Osteogenesis imperfecta type I
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