CNTNAP2 Chromosome 7

Contactin associated protein 2
190 variants 190 Health Risk

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What This Gene Does
This gene encodes a member of the neurexin family which functions in the vertebrate nervous system as cell adhesion molecules and receptors. This protein, like other neurexin proteins, contains epidermal growth factor repeats and laminin G domains. In addition, it includes an F5/8 type C domain, discoidin/neuropilin- and fibrinogen-like domains, thrombospondin N-terminal-like domains and a putative PDZ binding site. This protein is localized at the juxtaparanodes of myelinated axons, and mediates interactions between neurons and glia during nervous system development and is also involved in localization of potassium channels within differentiating axons. This gene encompasses almost 1.5% of chromosome 7 and is one of the largest genes in the human genome. It is directly bound and regulated by forkhead box protein P2, a transcription factor related to speech and language development. This gene has been implicated in multiple neurodevelopmental disorders, including Gilles de la Tourette syndrome, schizophrenia, epilepsy, autism, ADHD and intellectual disability. [provided by RefSeq, Jul 2017]
Gene Info
Gene Group
Contactin associated protein family
Locus Type
gene with protein product
Location
7q35-q36.1
Ensembl
ENSG00000174469
Associated Conditions (28)
Cortical dysplasia-focal epilepsy syndrome
Autism
susceptibility to
15
Inborn genetic diseases
See cases
CNTNAP2-related disorder
Melanoma
Lung cancer
Intellectual disability
Self-limited epilepsy with centrotemporal spikes
Malignant lymphoma
large B-cell
diffuse
Acute myeloid leukemia
Uterine corpus endometrial carcinoma
Chronic lymphocytic leukemia/small lymphocytic lymphoma
Lymphoma
Nonpapillary renal cell carcinoma
Familial cancer of breast
+8 more conditions
Key Variants
RS1057520468
Conflicting classifications of pathogenicity
Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
Health Risk
RS1064794765
Conflicting classifications of pathogenicity
Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
Health Risk
RS117876038
Conflicting classifications of pathogenicity
Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
Health Risk
RS121908445
Conflicting classifications of pathogenicity
Autism, susceptibility to, 15
Health Risk
RS1286176571
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS138481453
Conflicting classifications of pathogenicity
Cortical dysplasia-focal epilepsy syndrome, See cases, Inborn genetic diseases
Health Risk
RS138517537
Conflicting classifications of pathogenicity
Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, Cortical dysplasia-focal epilepsy syndrome
Health Risk
RS139180845
Conflicting classifications of pathogenicity
Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, CNTNAP2-related disorder
Health Risk
RS141078449
Conflicting classifications of pathogenicity
Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, CNTNAP2-related disorder
Health Risk
RS141439475
Conflicting classifications of pathogenicity
Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, CNTNAP2-related disorder
Health Risk
RS141772824
Conflicting classifications of pathogenicity
Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
Health Risk
RS141831869
Conflicting classifications of pathogenicity
Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
Health Risk
All Variants (190)
RSID Category Clinical Significance Conditions
RS373422045 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS374739970 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Autism, susceptibility to
RS375318010 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS375648820 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS376466129 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS376708056 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS535454043 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, Cortical dysplasia-focal epilepsy syndrome
RS538043826 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS540704185 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS540745201 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS546437079 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS570190374 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, Cortical dysplasia-focal epilepsy syndrome
RS587780903 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS60451214 Health Risk Conflicting classifications of pathogenicity
RS727503877 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS727503878 Health Risk Conflicting classifications of pathogenicity Autism, susceptibility to, 15
RS73464271 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, CNTNAP2-related disorder
RS745770134 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, Cortical dysplasia-focal epilepsy syndrome
RS746894028 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Autism, susceptibility to
RS747361414 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS748908765 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS749270618 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS749646225 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS752019151 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, Cortical dysplasia-focal epilepsy syndrome
RS753396304 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, CNTNAP2-related disorder, Cortical dysplasia-focal epilepsy syndrome
RS756947754 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Autism, susceptibility to
RS756994633 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Autism, susceptibility to
RS757043221 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS758630057 Health Risk Conflicting classifications of pathogenicity Self-limited epilepsy with centrotemporal spikes, Cortical dysplasia-focal epilepsy syndrome, Self-limited epilepsy with centrotemporal spikes
RS761663690 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS761732433 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, Cortical dysplasia-focal epilepsy syndrome
RS761820697 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS767033703 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS767821521 Health Risk Conflicting classifications of pathogenicity Autism, susceptibility to, 15
RS77025884 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Autism, susceptibility to
RS770951811 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, CNTNAP2-related disorder, Cortical dysplasia-focal epilepsy syndrome
RS771772546 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Autism, susceptibility to
RS773258369 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS773595457 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS774328147 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, Cortical dysplasia-focal epilepsy syndrome
RS776175685 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS776956365 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS778124698 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, Cortical dysplasia-focal epilepsy syndrome
RS779384498 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, Lung cancer
RS779901891 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS781236853 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS78223661 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Uterine corpus endometrial carcinoma, Malignant tumor of esophagus
RS794727172 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS794727872 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS886062052 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
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