SLC6A5 Chromosome 11
Solute carrier family 6 member 5
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What This Gene Does
This gene encodes a sodium- and chloride-dependent glycine neurotransmitter transporter. This integral membrane glycoprotein is responsible for the clearance of extracellular glycine during glycine-mediated neurotransmission. This protein is found in glycinergic axons and maintains a high presynaptic pool of neurotransmitter at glycinergic synapses. Mutations in this gene cause hyperekplexia; a heterogenous neurological disorder characterized by exaggerated startle responses and neonatal apnea. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2016]
Gene Info
Gene Group
Solute carrier family 6
Locus Type
gene with protein product
Location
11p15.1
Ensembl
ENSG00000165970
Associated Conditions (4)
Hyperekplexia 3
Inborn genetic diseases
SLC6A5-related disorder
Exaggerated startle response
Key Variants
RS121908494
Conflicting classifications of pathogenicity
Hyperekplexia 3, Hyperekplexia 3
Health Risk
RS142440636
Conflicting classifications of pathogenicity
Hyperekplexia 3, Hyperekplexia 3
Health Risk
RS143967107
Conflicting classifications of pathogenicity
Hyperekplexia 3, Inborn genetic diseases, Hyperekplexia 3
Health Risk
RS144285788
Conflicting classifications of pathogenicity
Hyperekplexia 3, Inborn genetic diseases, Hyperekplexia 3
Health Risk
RS1474968844
Conflicting classifications of pathogenicity
Hyperekplexia 3, Hyperekplexia 3
Health Risk
RS1476186922
Conflicting classifications of pathogenicity
Hyperekplexia 3, Hyperekplexia 3
Health Risk
RS151244472
Conflicting classifications of pathogenicity
Hyperekplexia 3, Inborn genetic diseases, Hyperekplexia 3
Health Risk
RS1715297
Conflicting classifications of pathogenicity
Hyperekplexia 3, Inborn genetic diseases, Hyperekplexia 3
Health Risk
RS200003617
Conflicting classifications of pathogenicity
Hyperekplexia 3, Inborn genetic diseases, Hyperekplexia 3
Health Risk
RS200496125
Conflicting classifications of pathogenicity
Hyperekplexia 3, Inborn genetic diseases, Hyperekplexia 3
Health Risk
RS201604337
Conflicting classifications of pathogenicity
Hyperekplexia 3, Inborn genetic diseases, Hyperekplexia 3
Health Risk
RS371265931
Conflicting classifications of pathogenicity
Hyperekplexia 3, Inborn genetic diseases, Hyperekplexia 3
Health Risk
All Variants (73)
| RSID | Category | Clinical Significance | Conditions |
|---|---|---|---|
| RS1852475495 | Health Risk | Pathogenic | Hyperekplexia 3, Hyperekplexia 3 |
| RS1852607635 | Health Risk | Pathogenic | — |
| RS186704689 | Health Risk | Pathogenic | Hyperekplexia 3, Hyperekplexia 3 |
| RS2133798401 | Health Risk | Pathogenic | Hyperekplexia 3, Hyperekplexia 3 |
| RS2133809394 | Health Risk | Pathogenic | Hyperekplexia 3, Hyperekplexia 3 |
| RS2494092557 | Health Risk | Pathogenic | Hyperekplexia 3, Hyperekplexia 3 |
| RS2494105360 | Health Risk | Pathogenic | Hyperekplexia 3, Hyperekplexia 3 |
| RS281864923 | Health Risk | Pathogenic | Hyperekplexia 3, Hyperekplexia 3 |
| RS281864924 | Health Risk | Pathogenic | Hyperekplexia 3, Hyperekplexia 3 |
| RS281864925 | Health Risk | Pathogenic | Hyperekplexia 3, Hyperekplexia 3 |
| RS281864926 | Health Risk | Pathogenic | Hyperekplexia 3, Hyperekplexia 3 |
| RS373223627 | Health Risk | Pathogenic | Hyperekplexia 3, Hyperekplexia 3 |
| RS376783257 | Health Risk | Pathogenic | Hyperekplexia 3, Hyperekplexia 3 |
| RS745539706 | Health Risk | Pathogenic | Hyperekplexia 3, Hyperekplexia 3 |
| RS755040627 | Health Risk | Pathogenic | Hyperekplexia 3, Hyperekplexia 3 |
| RS767695215 | Health Risk | Pathogenic | Exaggerated startle response, Hyperekplexia 3, Exaggerated startle response |
| RS778603956 | Health Risk | Pathogenic | Hyperekplexia 3, Hyperekplexia 3 |
| RS912922347 | Health Risk | Pathogenic | Hyperekplexia 3, Hyperekplexia 3 |
| RS931802079 | Health Risk | Pathogenic | Hyperekplexia 3, Hyperekplexia 3 |
| RS2494100057 | Health Risk | Pathogenic/Likely pathogenic | Hyperekplexia 3, Hyperekplexia 3 |
| RS752254977 | Health Risk | Pathogenic/Likely pathogenic | Hyperekplexia 3, Hyperekplexia 3 |
| RS770660705 | Health Risk | Pathogenic/Likely pathogenic | Hyperekplexia 3, Hyperekplexia 3 |
| RS772652517 | Health Risk | Pathogenic/Likely pathogenic | Hyperekplexia 3, SLC6A5-related disorder, Hyperekplexia 3 |