SLC5A7 Chromosome 2
Solute carrier family 5 member 7
Upload your DNA to see your personal genotypes for variants in SLC5A7.
What This Gene Does
This gene encodes a sodium ion- and chloride ion-dependent high-affinity transporter that mediates choline uptake for acetylcholine synthesis in cholinergic neurons. The protein transports choline from the extracellular space into presynaptic terminals for synthesis into acetylcholine. Increased choline uptake results from increased density of this protein in synaptosomal plasma membranes in response to depolarization of cholinergic terminals. Dysfunction of cholinergic signaling has been implicated in various disorders including depression, attention-deficit disorder, and schizophrenia. An allelic variant of this gene is associated with autosomal dominant distal hereditary motor neuronopathy type VIIA. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2015]
Gene Info
Gene Group
Solute carrier family 5
Locus Type
gene with protein product
Location
2q12.3
Ensembl
ENSG00000115665
Associated Conditions (9)
Neuronopathy
distal hereditary motor
type 7A
Congenital myasthenic syndrome 20
Inborn genetic diseases
SLC5A7-related disorder
Charcot-Marie-Tooth disease
Distal spinal muscular atrophy
Charcot-Marie-Tooth disease type 2
Key Variants
RS1191969326
Conflicting classifications of pathogenicity
Neuronopathy, distal hereditary motor, type 7A
Health Risk
RS1287734210
Conflicting classifications of pathogenicity
Neuronopathy, distal hereditary motor, type 7A
Health Risk
RS138945146
Conflicting classifications of pathogenicity
Neuronopathy, distal hereditary motor, type 7A
Health Risk
RS143876748
Conflicting classifications of pathogenicity
Neuronopathy, distal hereditary motor, type 7A
Health Risk
RS148535388
Conflicting classifications of pathogenicity
Neuronopathy, distal hereditary motor, type 7A
Health Risk
RS1558872822
Conflicting classifications of pathogenicity
Inborn genetic diseases, Neuronopathy, distal hereditary motor
Health Risk
RS1558872865
Conflicting classifications of pathogenicity
Neuronopathy, distal hereditary motor, type 7A
Health Risk
RS1677321281
Conflicting classifications of pathogenicity
Congenital myasthenic syndrome 20, Neuronopathy, distal hereditary motor
Health Risk
RS199693962
Conflicting classifications of pathogenicity
Neuronopathy, distal hereditary motor, type 7A
Health Risk
RS199864231
Conflicting classifications of pathogenicity
Neuronopathy, distal hereditary motor, type 7A
Health Risk
RS200286711
Conflicting classifications of pathogenicity
Neuronopathy, distal hereditary motor, type 7A
Health Risk
RS532174786
Conflicting classifications of pathogenicity
Congenital myasthenic syndrome 20, Neuronopathy, distal hereditary motor
Health Risk
All Variants (30)
| RSID | Category | Clinical Significance | Conditions |
|---|---|---|---|
| RS1191969326 | Health Risk | Conflicting classifications of pathogenicity | Neuronopathy, distal hereditary motor, type 7A |
| RS1287734210 | Health Risk | Conflicting classifications of pathogenicity | Neuronopathy, distal hereditary motor, type 7A |
| RS138945146 | Health Risk | Conflicting classifications of pathogenicity | Neuronopathy, distal hereditary motor, type 7A |
| RS143876748 | Health Risk | Conflicting classifications of pathogenicity | Neuronopathy, distal hereditary motor, type 7A |
| RS148535388 | Health Risk | Conflicting classifications of pathogenicity | Neuronopathy, distal hereditary motor, type 7A |
| RS1558872822 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, Neuronopathy, distal hereditary motor |
| RS1558872865 | Health Risk | Conflicting classifications of pathogenicity | Neuronopathy, distal hereditary motor, type 7A |
| RS1677321281 | Health Risk | Conflicting classifications of pathogenicity | Congenital myasthenic syndrome 20, Neuronopathy, distal hereditary motor |
| RS199693962 | Health Risk | Conflicting classifications of pathogenicity | Neuronopathy, distal hereditary motor, type 7A |
| RS199864231 | Health Risk | Conflicting classifications of pathogenicity | Neuronopathy, distal hereditary motor, type 7A |
| RS200286711 | Health Risk | Conflicting classifications of pathogenicity | Neuronopathy, distal hereditary motor, type 7A |
| RS532174786 | Health Risk | Conflicting classifications of pathogenicity | Congenital myasthenic syndrome 20, Neuronopathy, distal hereditary motor |
| RS75427357 | Health Risk | Conflicting classifications of pathogenicity | Neuronopathy, distal hereditary motor, type 7A |
| RS759833850 | Health Risk | Conflicting classifications of pathogenicity | Congenital myasthenic syndrome 20, Neuronopathy, distal hereditary motor |
| RS773393717 | Health Risk | Conflicting classifications of pathogenicity | Distal spinal muscular atrophy, Neuronopathy, distal hereditary motor |
| RS961639912 | Health Risk | Conflicting classifications of pathogenicity | Congenital myasthenic syndrome 20, Neuronopathy, distal hereditary motor |
| RS147656110 | Health Risk | Likely pathogenic | Congenital myasthenic syndrome 20, Neuronopathy, distal hereditary motor |
| RS1677478183 | Health Risk | Likely pathogenic | Neuronopathy, distal hereditary motor, type 7A |
| RS1678115852 | Health Risk | Likely pathogenic | Neuronopathy, distal hereditary motor, type 7A |
| RS1678270963 | Health Risk | Likely pathogenic | — |
| RS2104340311 | Health Risk | Likely pathogenic | Neuronopathy, distal hereditary motor, type 7A |
| RS2104379614 | Health Risk | Likely pathogenic | Charcot-Marie-Tooth disease type 2, Charcot-Marie-Tooth disease type 2 |
| RS2467051596 | Health Risk | Likely pathogenic | Congenital myasthenic syndrome 20, Congenital myasthenic syndrome 20 |
| RS2467117257 | Health Risk | Likely pathogenic | Neuronopathy, distal hereditary motor, type 7A |
| RS2467132050 | Health Risk | Likely pathogenic | Congenital myasthenic syndrome 20, Congenital myasthenic syndrome 20 |
| RS2467132951 | Health Risk | Likely pathogenic | Congenital myasthenic syndrome 20, Congenital myasthenic syndrome 20 |
| RS2467133875 | Health Risk | Likely pathogenic | Neuronopathy, distal hereditary motor, type 7A |
| RS886039767 | Health Risk | Likely pathogenic | Congenital myasthenic syndrome 20, Congenital myasthenic syndrome 20 |
| RS2104342591 | Health Risk | Pathogenic | Neuronopathy, distal hereditary motor, type 7A |
| RS886039768 | Health Risk | Pathogenic | Congenital myasthenic syndrome 20, Congenital myasthenic syndrome 20 |