SLC4A1 Chromosome 17

Solute carrier family 4 member 1 (Diego blood group)
205 variants 204 Health Risk 1 Trait

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What This Gene Does
The protein encoded by this gene is part of the anion exchanger (AE) family and is expressed in the erythrocyte plasma membrane, where it functions as a chloride/bicarbonate exchanger involved in carbon dioxide transport from tissues to lungs. The protein comprises two domains that are structurally and functionally distinct. The N-terminal 40kDa domain is located in the cytoplasm and acts as an attachment site for the red cell skeleton by binding ankyrin. The glycosylated C-terminal membrane-associated domain contains 12-14 membrane spanning segments and carries out the stilbene disulphonate-sensitive exchange transport of anions. The cytoplasmic tail at the extreme C-terminus of the membrane domain binds carbonic anhydrase II. The encoded protein associates with the red cell membrane protein glycophorin A and this association promotes the correct folding and translocation of the exchanger. This protein is predominantly dimeric but forms tetramers in the presence of ankyrin. Many mutations in this gene are known in man, and these mutations can lead to two types of disease: destabilization of red cell membrane leading to hereditary spherocytosis, and defective kidney acid secretion leading to distal renal tubular acidosis. Other mutations that do not give rise to disease result in novel blood group antigens, which form the Diego blood group system. Southeast Asian ovalocytosis (SAO, Melanesian ovalocytosis) results from the heterozygous presence of a deletion in the encoded protein and is common in areas where Plasmodium falciparum malaria is endemic. One null mutation in this gene is known, resulting in very severe anemia and nephrocalcinosis. [provided by RefSeq, Jul 2008]
Gene Info
Gene Group
"Blood group antigens|CD molecules|Solute carrier family 4"
Locus Type
gene with protein product
Location
17q21.31
Ensembl
ENSG00000004939
Associated Conditions (24)
Hereditary spherocytosis type 4
11 conditions
Autosomal dominant distal renal tubular acidosis
SWANN BLOOD GROUP ANTIGEN
Hemolytic anemia
Acanthocytosis due to band 3 HT
Acanthocytosis
SLC4A1-related disorder
Renal tubular acidosis
distal
4
with hemolytic anemia
Inborn genetic diseases
Cryohydrocytosis
Distal renal tubular acidosis
Autosomal recessive distal renal tubular acidosis
BLOOD GROUP--WRIGHT ANTIGEN
with normal red cell morphology
BLOOD GROUP--DIEGO SYSTEM
Southeast Asian ovalocytosis
+4 more conditions
Key Variants
RS121912741
Conflicting classifications of pathogenicity
Hereditary spherocytosis type 4, Hereditary spherocytosis type 4, 11 conditions
Health Risk
RS121912749
Conflicting classifications of pathogenicity
Hereditary spherocytosis type 4, Autosomal dominant distal renal tubular acidosis, 11 conditions
Health Risk
RS121912757
Conflicting classifications of pathogenicity
SWANN BLOOD GROUP ANTIGEN, Autosomal dominant distal renal tubular acidosis, Hemolytic anemia
Health Risk
RS121912759
Conflicting classifications of pathogenicity
Acanthocytosis due to band 3 HT, Acanthocytosis, Hemolytic anemia
Health Risk
RS13306774
Conflicting classifications of pathogenicity
Hereditary spherocytosis type 4, Hereditary spherocytosis type 4
Health Risk
RS13306776
Conflicting classifications of pathogenicity
Hereditary spherocytosis type 4, Autosomal dominant distal renal tubular acidosis, Hemolytic anemia
Health Risk
RS1362663440
Conflicting classifications of pathogenicity
Hereditary spherocytosis type 4, Hereditary spherocytosis type 4
Health Risk
RS138242019
Conflicting classifications of pathogenicity
Autosomal dominant distal renal tubular acidosis, Hereditary spherocytosis type 4, Hemolytic anemia
Health Risk
RS139308660
Conflicting classifications of pathogenicity
Autosomal dominant distal renal tubular acidosis, Hereditary spherocytosis type 4, Hemolytic anemia
Health Risk
RS141605301
Conflicting classifications of pathogenicity
Autosomal dominant distal renal tubular acidosis, Hemolytic anemia, Hereditary spherocytosis type 4
Health Risk
RS142161945
Conflicting classifications of pathogenicity
Health Risk
RS142757938
Conflicting classifications of pathogenicity
Health Risk
All Variants (205)
RSID Category Clinical Significance Conditions
RS571376371 Health Risk Conflicting classifications of pathogenicity Autosomal dominant distal renal tubular acidosis, Renal tubular acidosis, distal
RS571740084 Health Risk Conflicting classifications of pathogenicity Autosomal recessive distal renal tubular acidosis, Renal tubular acidosis, distal
RS746103796 Health Risk Conflicting classifications of pathogenicity Hemolytic anemia, Autosomal dominant distal renal tubular acidosis, Hereditary spherocytosis type 4
RS746406399 Health Risk Conflicting classifications of pathogenicity Hemolytic anemia, Autosomal dominant distal renal tubular acidosis, Hereditary spherocytosis type 4
RS748428663 Health Risk Conflicting classifications of pathogenicity Hereditary spherocytosis type 4, Hemolytic anemia, Autosomal dominant distal renal tubular acidosis
RS749020872 Health Risk Conflicting classifications of pathogenicity 11 conditions, 11 conditions
RS753357599 Health Risk Conflicting classifications of pathogenicity Hereditary spherocytosis type 4, Autosomal dominant distal renal tubular acidosis, Hemolytic anemia
RS754017629 Health Risk Conflicting classifications of pathogenicity Hemolytic anemia, Autosomal dominant distal renal tubular acidosis, Hereditary spherocytosis type 4
RS754973425 Health Risk Conflicting classifications of pathogenicity Renal tubular acidosis, distal, 4
RS75731670 Health Risk Conflicting classifications of pathogenicity BLOOD GROUP--WRIGHT ANTIGEN, Hereditary spherocytosis type 4, Autosomal dominant distal renal tubular acidosis
RS758335896 Health Risk Conflicting classifications of pathogenicity Hereditary spherocytosis type 4, 11 conditions, Hereditary spherocytosis type 4
RS763988041 Health Risk Conflicting classifications of pathogenicity Autosomal dominant distal renal tubular acidosis, Hemolytic anemia, Hereditary spherocytosis type 4
RS764833865 Health Risk Conflicting classifications of pathogenicity Hemolytic anemia, Autosomal dominant distal renal tubular acidosis, Hereditary spherocytosis type 4
RS765911147 Health Risk Conflicting classifications of pathogenicity Hemolytic anemia, Autosomal dominant distal renal tubular acidosis, Hereditary spherocytosis type 4
RS766674440 Health Risk Conflicting classifications of pathogenicity Autosomal dominant distal renal tubular acidosis, Hemolytic anemia, Hereditary spherocytosis type 4
RS767916903 Health Risk Conflicting classifications of pathogenicity
RS768426818 Health Risk Conflicting classifications of pathogenicity 11 conditions, Inborn genetic diseases, 11 conditions
RS768727937 Health Risk Conflicting classifications of pathogenicity
RS770569237 Health Risk Conflicting classifications of pathogenicity Autosomal dominant distal renal tubular acidosis, Autosomal dominant distal renal tubular acidosis
RS772264078 Health Risk Conflicting classifications of pathogenicity Hereditary spherocytosis type 4, 11 conditions, Hereditary spherocytosis type 4
RS772317162 Health Risk Conflicting classifications of pathogenicity Autosomal dominant distal renal tubular acidosis, Hereditary spherocytosis type 4, Hemolytic anemia
RS775095594 Health Risk Conflicting classifications of pathogenicity Autosomal dominant distal renal tubular acidosis, Hemolytic anemia, Hereditary spherocytosis type 4
RS776491345 Health Risk Conflicting classifications of pathogenicity
RS777464599 Health Risk Conflicting classifications of pathogenicity Cryohydrocytosis, Cryohydrocytosis
RS780256979 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, 11 conditions, Inborn genetic diseases
RS886053000 Health Risk Conflicting classifications of pathogenicity Autosomal dominant distal renal tubular acidosis, Hemolytic anemia, Hereditary spherocytosis type 4
RS1185330478 Health Risk Likely pathogenic Cryohydrocytosis, Cryohydrocytosis
RS1192674860 Health Risk Likely pathogenic
RS121912745 Health Risk Likely pathogenic Autosomal dominant distal renal tubular acidosis, 11 conditions, Renal tubular acidosis
RS121912750 Health Risk Likely pathogenic Hereditary spherocytosis type 4, Hereditary spherocytosis type 4
RS1476185218 Health Risk Likely pathogenic
RS1555596165 Health Risk Likely pathogenic Hereditary spherocytosis type 4, Hereditary spherocytosis type 4
RS1567834739 Health Risk Likely pathogenic 11 conditions, 11 conditions
RS199694087 Health Risk Likely pathogenic Hereditary spherocytosis type 4, Hemolytic anemia, Autosomal dominant distal renal tubular acidosis
RS2047357659 Health Risk Likely pathogenic
RS2047444948 Health Risk Likely pathogenic
RS2144601189 Health Risk Likely pathogenic SLC4A1-related disorder, 11 conditions, SLC4A1-related disorder
RS2144601728 Health Risk Likely pathogenic
RS2144614196 Health Risk Likely pathogenic
RS2144615077 Health Risk Likely pathogenic
RS2144616948 Health Risk Likely pathogenic
RS2509958411 Health Risk Likely pathogenic
RS2509958522 Health Risk Likely pathogenic Cryohydrocytosis, Cryohydrocytosis
RS2509958666 Health Risk Likely pathogenic
RS2509958707 Health Risk Likely pathogenic Hereditary spherocytosis type 4, Hereditary spherocytosis type 4
RS2509958853 Health Risk Likely pathogenic
RS2509960774 Health Risk Likely pathogenic
RS2509960998 Health Risk Likely pathogenic Hereditary spherocytosis type 4, Hereditary spherocytosis type 4
RS2509962459 Health Risk Likely pathogenic
RS2509962539 Health Risk Likely pathogenic
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