SLC46A1 Chromosome 17
Solute carrier family 46 member 1
Upload your DNA to see your personal genotypes for variants in SLC46A1.
What This Gene Does
This gene encodes a transmembrane proton-coupled folate transporter protein that facilitates the movement of folate and antifolate substrates across cell membranes, optimally in acidic pH environments. This protein is also expressed in the brain and choroid plexus where it transports folates into the central nervous system. This protein further functions as a heme transporter in duodenal enterocytes, and potentially in other tissues like liver and kidney. Its localization to the apical membrane or cytoplasm of intestinal cells is modulated by dietary iron levels. Mutations in this gene are associated with autosomal recessive hereditary folate malabsorption disease. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Aug 2013]
Gene Info
Gene Group
Solute carrier family 46
Locus Type
gene with protein product
Location
17q11.2
Ensembl
ENSG00000076351
Associated Conditions (4)
Congenital defect of folate absorption
SLC46A1-related disorder
Intellectual disability
Inborn genetic diseases
Key Variants
RS141992236
Conflicting classifications of pathogenicity
Health Risk
RS188529539
Conflicting classifications of pathogenicity
Congenital defect of folate absorption, SLC46A1-related disorder, Congenital defect of folate absorption
Health Risk
RS189103810
Conflicting classifications of pathogenicity
Congenital defect of folate absorption, Congenital defect of folate absorption
Health Risk
RS201837257
Conflicting classifications of pathogenicity
Congenital defect of folate absorption, Intellectual disability, Inborn genetic diseases
Health Risk
RS2068243273
Conflicting classifications of pathogenicity
Congenital defect of folate absorption, Congenital defect of folate absorption
Health Risk
RS281875208
Conflicting classifications of pathogenicity
Congenital defect of folate absorption, Congenital defect of folate absorption
Health Risk
RS281875211
Conflicting classifications of pathogenicity
Congenital defect of folate absorption, Congenital defect of folate absorption
Health Risk
RS41297065
Conflicting classifications of pathogenicity
Congenital defect of folate absorption, SLC46A1-related disorder, Inborn genetic diseases
Health Risk
RS41297067
Conflicting classifications of pathogenicity
Congenital defect of folate absorption, Congenital defect of folate absorption
Health Risk
RS41297069
Conflicting classifications of pathogenicity
Congenital defect of folate absorption, SLC46A1-related disorder, Inborn genetic diseases
Health Risk
RS41297071
Conflicting classifications of pathogenicity
Congenital defect of folate absorption, Congenital defect of folate absorption
Health Risk
RS541069777
Conflicting classifications of pathogenicity
Congenital defect of folate absorption, Congenital defect of folate absorption
Health Risk
All Variants (35)
| RSID | Category | Clinical Significance | Conditions |
|---|---|---|---|
| RS141992236 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS188529539 | Health Risk | Conflicting classifications of pathogenicity | Congenital defect of folate absorption, SLC46A1-related disorder, Congenital defect of folate absorption |
| RS189103810 | Health Risk | Conflicting classifications of pathogenicity | Congenital defect of folate absorption, Congenital defect of folate absorption |
| RS201837257 | Health Risk | Conflicting classifications of pathogenicity | Congenital defect of folate absorption, Intellectual disability, Inborn genetic diseases |
| RS2068243273 | Health Risk | Conflicting classifications of pathogenicity | Congenital defect of folate absorption, Congenital defect of folate absorption |
| RS281875208 | Health Risk | Conflicting classifications of pathogenicity | Congenital defect of folate absorption, Congenital defect of folate absorption |
| RS281875211 | Health Risk | Conflicting classifications of pathogenicity | Congenital defect of folate absorption, Congenital defect of folate absorption |
| RS41297065 | Health Risk | Conflicting classifications of pathogenicity | Congenital defect of folate absorption, SLC46A1-related disorder, Inborn genetic diseases |
| RS41297067 | Health Risk | Conflicting classifications of pathogenicity | Congenital defect of folate absorption, Congenital defect of folate absorption |
| RS41297069 | Health Risk | Conflicting classifications of pathogenicity | Congenital defect of folate absorption, SLC46A1-related disorder, Inborn genetic diseases |
| RS41297071 | Health Risk | Conflicting classifications of pathogenicity | Congenital defect of folate absorption, Congenital defect of folate absorption |
| RS541069777 | Health Risk | Conflicting classifications of pathogenicity | Congenital defect of folate absorption, Congenital defect of folate absorption |
| RS551213215 | Health Risk | Conflicting classifications of pathogenicity | Congenital defect of folate absorption, Congenital defect of folate absorption |
| RS782306668 | Health Risk | Conflicting classifications of pathogenicity | Congenital defect of folate absorption, Congenital defect of folate absorption |
| RS782480845 | Health Risk | Conflicting classifications of pathogenicity | Congenital defect of folate absorption, Congenital defect of folate absorption |
| RS2142454403 | Health Risk | Likely pathogenic | — |
| RS2508305134 | Health Risk | Likely pathogenic | — |
| RS2508308450 | Health Risk | Likely pathogenic | Congenital defect of folate absorption, Congenital defect of folate absorption |
| RS80338774 | Health Risk | Likely pathogenic | Congenital defect of folate absorption, Congenital defect of folate absorption |
| RS1263347824 | Health Risk | Pathogenic | — |
| RS2142465494 | Health Risk | Pathogenic | — |
| RS2142467231 | Health Risk | Pathogenic | — |
| RS2508263280 | Health Risk | Pathogenic | Congenital defect of folate absorption, Congenital defect of folate absorption |
| RS2508288834 | Health Risk | Pathogenic | — |
| RS281875209 | Health Risk | Pathogenic | Congenital defect of folate absorption, Congenital defect of folate absorption |
| RS397515391 | Health Risk | Pathogenic | Congenital defect of folate absorption, Congenital defect of folate absorption |
| RS397515574 | Health Risk | Pathogenic | Congenital defect of folate absorption, Congenital defect of folate absorption |
| RS782656090 | Health Risk | Pathogenic | — |
| RS80338769 | Health Risk | Pathogenic | Congenital defect of folate absorption, Congenital defect of folate absorption |
| RS80338770 | Health Risk | Pathogenic | Congenital defect of folate absorption, Congenital defect of folate absorption, Congenital defect of folate absorption |
| RS80338772 | Health Risk | Pathogenic | Congenital defect of folate absorption, Congenital defect of folate absorption |
| RS80338773 | Health Risk | Pathogenic | Congenital defect of folate absorption, Congenital defect of folate absorption |
| RS80338775 | Health Risk | Pathogenic | Congenital defect of folate absorption, Inborn genetic diseases, SLC46A1-related disorder |
| RS869040219 | Health Risk | Pathogenic | — |
| RS1597834560 | Health Risk | Pathogenic/Likely pathogenic | Congenital defect of folate absorption, Congenital defect of folate absorption |