SHANK2 Chromosome 11
SH3 and multiple ankyrin repeat domains 2
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What This Gene Does
This gene encodes a protein that is a member of the Shank family of synaptic proteins that may function as molecular scaffolds in the postsynaptic density of excitatory synapses. Shank proteins contain multiple domains for protein-protein interaction, including ankyrin repeats, and an SH3 domain. This particular family member contains a PDZ domain, a consensus sequence for cortactin SH3 domain-binding peptides and a sterile alpha motif. The alternative splicing demonstrated in Shank genes has been suggested as a mechanism for regulating the molecular structure of Shank and the spectrum of Shank-interacting proteins in the postsynaptic densities of the adult and developing brain. Alterations in the encoded protein may be associated with susceptibility to autism spectrum disorder. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2014]
Gene Info
Gene Group
"Ankyrin repeat domain containing|Sterile alpha motif domain containing|PDZ domain containing|MicroRNA protein coding host genes"
Locus Type
gene with protein product
Location
11q13.3-q13.4
Ensembl
ENSG00000162105
Associated Conditions (10)
Autism
susceptibility to
17
Inborn genetic diseases
Autism spectrum disorder
Intellectual disability
See cases
Global developmental delay
Rare disease with autism
Neurodevelopmental disorder
Key Variants
RS117843717
Conflicting classifications of pathogenicity
Autism, Autism
Health Risk
RS1327654017
Conflicting classifications of pathogenicity
Autism, susceptibility to, 17
Health Risk
RS146580493
Conflicting classifications of pathogenicity
Autism, Autism
Health Risk
RS150021463
Conflicting classifications of pathogenicity
Health Risk
RS150944234
Conflicting classifications of pathogenicity
Health Risk
RS1555100954
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS1565526121
Conflicting classifications of pathogenicity
Autism spectrum disorder, Autism, susceptibility to
Health Risk
RS183556625
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS199717803
Conflicting classifications of pathogenicity
Inborn genetic diseases, Autism, susceptibility to
Health Risk
RS2058867660
Conflicting classifications of pathogenicity
Autism, susceptibility to, 17
Health Risk
RS373914403
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS374476702
Conflicting classifications of pathogenicity
Autism, susceptibility to, 17
Health Risk
All Variants (46)
| RSID | Category | Clinical Significance | Conditions |
|---|---|---|---|
| RS117843717 | Health Risk | Conflicting classifications of pathogenicity | Autism, Autism |
| RS1327654017 | Health Risk | Conflicting classifications of pathogenicity | Autism, susceptibility to, 17 |
| RS146580493 | Health Risk | Conflicting classifications of pathogenicity | Autism, Autism |
| RS150021463 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS150944234 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS1555100954 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, Inborn genetic diseases |
| RS1565526121 | Health Risk | Conflicting classifications of pathogenicity | Autism spectrum disorder, Autism, susceptibility to |
| RS183556625 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, Inborn genetic diseases |
| RS199717803 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, Autism, susceptibility to |
| RS2058867660 | Health Risk | Conflicting classifications of pathogenicity | Autism, susceptibility to, 17 |
| RS373914403 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, Inborn genetic diseases |
| RS374476702 | Health Risk | Conflicting classifications of pathogenicity | Autism, susceptibility to, 17 |
| RS376267466 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS544429954 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, Inborn genetic diseases |
| RS559537625 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS55968949 | Health Risk | Conflicting classifications of pathogenicity | Autism, susceptibility to, 17 |
| RS781890061 | Health Risk | Conflicting classifications of pathogenicity | Autism, susceptibility to, 17 |
| RS782210973 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, Inborn genetic diseases |
| RS1555100912 | Health Risk | Likely pathogenic | — |
| RS1590930234 | Health Risk | Likely pathogenic | — |
| RS1952667695 | Health Risk | Likely pathogenic | — |
| RS2058800704 | Health Risk | Likely pathogenic | — |
| RS2058827886 | Health Risk | Likely pathogenic | — |
| RS2134263074 | Health Risk | Likely pathogenic | — |
| RS2134275180 | Health Risk | Likely pathogenic | Autism, susceptibility to, 17 |
| RS2135665193 | Health Risk | Likely pathogenic | See cases, See cases |
| RS2135822551 | Health Risk | Likely pathogenic | Autism, susceptibility to, 17 |
| RS2495592820 | Health Risk | Likely pathogenic | Autism, susceptibility to, 17 |
| RS2495749734 | Health Risk | Likely pathogenic | Autism, susceptibility to, 17 |
| RS2499554758 | Health Risk | Likely pathogenic | Autism, susceptibility to, 17 |
| RS2503513136 | Health Risk | Likely pathogenic | Autism, susceptibility to, 17 |
| RS1555013332 | Health Risk | Pathogenic | Autism, susceptibility to, 17 |
| RS1565527302 | Health Risk | Pathogenic | Autism spectrum disorder, Autism spectrum disorder |
| RS2058786429 | Health Risk | Pathogenic | Global developmental delay, Global developmental delay |
| RS2058902255 | Health Risk | Pathogenic | — |
| RS2135739220 | Health Risk | Pathogenic | Autism, susceptibility to, 17 |
| RS2135751909 | Health Risk | Pathogenic | Autism, susceptibility to, 17 |
| RS2135762104 | Health Risk | Pathogenic | — |
| RS2135822918 | Health Risk | Pathogenic | — |
| RS2135828294 | Health Risk | Pathogenic | — |
| RS2495465726 | Health Risk | Pathogenic | Rare disease with autism, Rare disease with autism |
| RS2495469105 | Health Risk | Pathogenic | Autism, susceptibility to, 17 |
| RS2495470269 | Health Risk | Pathogenic | Autism, susceptibility to, 17 |
| RS1555094999 | Health Risk | Pathogenic/Likely pathogenic | Neurodevelopmental disorder, Autism, susceptibility to |
| RS2058899044 | Health Risk | Pathogenic/Likely pathogenic | Intellectual disability, Autism, susceptibility to |
| RS2134275196 | Health Risk | Pathogenic/Likely pathogenic | Autism spectrum disorder, Rare disease with autism, Autism spectrum disorder |