SEMA4A Chromosome 1
Semaphorin 4A
Upload your DNA to see your personal genotypes for variants in SEMA4A.
What This Gene Does
This gene encodes a member of the semaphorin family of soluble and transmembrane proteins. Semaphorins are involved in numerous functions, including axon guidance, morphogenesis, carcinogenesis, and immunomodulation. The encoded protein is a single-pass type I membrane protein containing an immunoglobulin-like C2-type domain, a PSI domain and a sema domain. It inhibits axonal extension by providing local signals to specify territories inaccessible for growing axons. It is an activator of T-cell-mediated immunity and suppresses vascular endothelial growth factor (VEGF)-mediated endothelial cell migration and proliferation in vitro and angiogenesis in vivo. Mutations in this gene are associated with retinal degenerative diseases including retinitis pigmentosa type 35 (RP35) and cone-rod dystrophy type 10 (CORD10). Multiple alternatively spliced transcript variants encoding different isoforms have been identified.[provided by RefSeq, Sep 2010]
Gene Info
Gene Group
Semaphorins
Locus Type
gene with protein product
Location
1q22
Ensembl
ENSG00000196189
Associated Conditions (8)
Cone-rod dystrophy 10
Retinitis pigmentosa
Retinal dystrophy
SEMA4A-related disorder
Colorectal cancer
Optic atrophy
Helicoid peripapillary chorioretinal degeneration
Retinitis pigmentosa 35
Key Variants
RS1028250483
Conflicting classifications of pathogenicity
Health Risk
RS117762142
Conflicting classifications of pathogenicity
Cone-rod dystrophy 10, Retinitis pigmentosa, Cone-rod dystrophy 10
Health Risk
RS138398085
Conflicting classifications of pathogenicity
Retinitis pigmentosa, Cone-rod dystrophy 10, Retinal dystrophy
Health Risk
RS141177664
Conflicting classifications of pathogenicity
Health Risk
RS141707567
Conflicting classifications of pathogenicity
Retinitis pigmentosa, Cone-rod dystrophy 10, SEMA4A-related disorder
Health Risk
RS144475266
Conflicting classifications of pathogenicity
Retinitis pigmentosa, Cone-rod dystrophy 10, Retinitis pigmentosa
Health Risk
RS144540956
Conflicting classifications of pathogenicity
Cone-rod dystrophy 10, Retinitis pigmentosa, Cone-rod dystrophy 10
Health Risk
RS145133730
Conflicting classifications of pathogenicity
Cone-rod dystrophy 10, Retinitis pigmentosa, Cone-rod dystrophy 10
Health Risk
RS145993678
Conflicting classifications of pathogenicity
Cone-rod dystrophy 10, Retinitis pigmentosa, Cone-rod dystrophy 10
Health Risk
RS146011929
Conflicting classifications of pathogenicity
Cone-rod dystrophy 10, Retinitis pigmentosa, Cone-rod dystrophy 10
Health Risk
RS146822426
Conflicting classifications of pathogenicity
Colorectal cancer, Cone-rod dystrophy 10, Retinitis pigmentosa
Health Risk
RS148674059
Conflicting classifications of pathogenicity
Health Risk
All Variants (41)
| RSID | Category | Clinical Significance | Conditions |
|---|---|---|---|
| RS1028250483 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS117762142 | Health Risk | Conflicting classifications of pathogenicity | Cone-rod dystrophy 10, Retinitis pigmentosa, Cone-rod dystrophy 10 |
| RS138398085 | Health Risk | Conflicting classifications of pathogenicity | Retinitis pigmentosa, Cone-rod dystrophy 10, Retinal dystrophy |
| RS141177664 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS141707567 | Health Risk | Conflicting classifications of pathogenicity | Retinitis pigmentosa, Cone-rod dystrophy 10, SEMA4A-related disorder |
| RS144475266 | Health Risk | Conflicting classifications of pathogenicity | Retinitis pigmentosa, Cone-rod dystrophy 10, Retinitis pigmentosa |
| RS144540956 | Health Risk | Conflicting classifications of pathogenicity | Cone-rod dystrophy 10, Retinitis pigmentosa, Cone-rod dystrophy 10 |
| RS145133730 | Health Risk | Conflicting classifications of pathogenicity | Cone-rod dystrophy 10, Retinitis pigmentosa, Cone-rod dystrophy 10 |
| RS145993678 | Health Risk | Conflicting classifications of pathogenicity | Cone-rod dystrophy 10, Retinitis pigmentosa, Cone-rod dystrophy 10 |
| RS146011929 | Health Risk | Conflicting classifications of pathogenicity | Cone-rod dystrophy 10, Retinitis pigmentosa, Cone-rod dystrophy 10 |
| RS146822426 | Health Risk | Conflicting classifications of pathogenicity | Colorectal cancer, Cone-rod dystrophy 10, Retinitis pigmentosa |
| RS148674059 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS148852472 | Health Risk | Conflicting classifications of pathogenicity | Retinitis pigmentosa, Cone-rod dystrophy 10, Retinitis pigmentosa |
| RS149652495 | Health Risk | Conflicting classifications of pathogenicity | Retinal dystrophy, Retinitis pigmentosa, Cone-rod dystrophy 10 |
| RS149711133 | Health Risk | Conflicting classifications of pathogenicity | Cone-rod dystrophy 10, Retinitis pigmentosa, Cone-rod dystrophy 10 |
| RS151260330 | Health Risk | Conflicting classifications of pathogenicity | Retinitis pigmentosa, Cone-rod dystrophy 10, Retinitis pigmentosa |
| RS1572428364 | Health Risk | Conflicting classifications of pathogenicity | Retinal dystrophy, Retinal dystrophy |
| RS1655391926 | Health Risk | Conflicting classifications of pathogenicity | Retinal dystrophy, Retinal dystrophy |
| RS199696322 | Health Risk | Conflicting classifications of pathogenicity | Retinitis pigmentosa, Cone-rod dystrophy 10, Retinal dystrophy |
| RS201715448 | Health Risk | Conflicting classifications of pathogenicity | Cone-rod dystrophy 10, Retinitis pigmentosa, Retinal dystrophy |
| RS373565051 | Health Risk | Conflicting classifications of pathogenicity | Cone-rod dystrophy 10, Retinitis pigmentosa, Cone-rod dystrophy 10 |
| RS374441472 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS562037528 | Health Risk | Conflicting classifications of pathogenicity | Cone-rod dystrophy 10, Retinitis pigmentosa, Cone-rod dystrophy 10 |
| RS56271605 | Health Risk | Conflicting classifications of pathogenicity | Cone-rod dystrophy 10, Retinitis pigmentosa, Cone-rod dystrophy 10 |
| RS568949451 | Health Risk | Conflicting classifications of pathogenicity | Cone-rod dystrophy 10, Retinitis pigmentosa, Cone-rod dystrophy 10 |
| RS577699691 | Health Risk | Conflicting classifications of pathogenicity | Cone-rod dystrophy 10, Retinitis pigmentosa, Cone-rod dystrophy 10 |
| RS577740555 | Health Risk | Conflicting classifications of pathogenicity | Cone-rod dystrophy 10, Retinitis pigmentosa, Cone-rod dystrophy 10 |
| RS753853752 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS755693576 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS756475595 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS757466000 | Health Risk | Conflicting classifications of pathogenicity | Retinitis pigmentosa, Cone-rod dystrophy 10, SEMA4A-related disorder |
| RS759638923 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS760609808 | Health Risk | Conflicting classifications of pathogenicity | Retinal dystrophy, Retinal dystrophy |
| RS76347207 | Health Risk | Conflicting classifications of pathogenicity | Cone-rod dystrophy 10, Retinitis pigmentosa, Cone-rod dystrophy 10 |
| RS763670204 | Health Risk | Conflicting classifications of pathogenicity | Retinal dystrophy, Retinal dystrophy |
| RS768178231 | Health Risk | Conflicting classifications of pathogenicity | Retinal dystrophy, Retinal dystrophy |
| RS772147085 | Health Risk | Conflicting classifications of pathogenicity | Cone-rod dystrophy 10, Retinitis pigmentosa, Cone-rod dystrophy 10 |
| RS2528301563 | Health Risk | Likely pathogenic | Retinal dystrophy, Retinal dystrophy |
| RS1249149946 | Health Risk | Pathogenic | Helicoid peripapillary chorioretinal degeneration, Helicoid peripapillary chorioretinal degeneration |
| RS1653548589 | Health Risk | Pathogenic | Retinitis pigmentosa, Retinitis pigmentosa |
| RS267607034 | Health Risk | Pathogenic | Cone-rod dystrophy 10, Retinitis pigmentosa 35, Cone-rod dystrophy 10 |