SCP2 Chromosome 1
Sterol carrier protein 2
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What This Gene Does
This gene encodes two proteins: sterol carrier protein X (SCPx) and sterol carrier protein 2 (SCP2), as a result of transcription initiation from 2 independently regulated promoters. The transcript initiated from the proximal promoter encodes the longer SCPx protein, and the transcript initiated from the distal promoter encodes the shorter SCP2 protein, with the 2 proteins sharing a common C-terminus. Evidence suggests that the SCPx protein is a peroxisome-associated thiolase that is involved in the oxidation of branched chain fatty acids, while the SCP2 protein is thought to be an intracellular lipid transfer protein. This gene is highly expressed in organs involved in lipid metabolism, and may play a role in Zellweger syndrome, in which cells are deficient in peroxisomes and have impaired bile acid synthesis. Alternative splicing of this gene produces multiple transcript variants, some encoding different isoforms.[provided by RefSeq, Aug 2010]
Gene Info
Gene Group
"MicroRNA protein coding host genes|SCP2 domain containing"
Locus Type
gene with protein product
Location
1p32.3
Ensembl
ENSG00000116171
Associated Conditions (4)
SCP2-related disorder
Sterol carrier protein 2 deficiency
Hepatocellular carcinoma
Ovarian cancer
Key Variants
RS143534838
Conflicting classifications of pathogenicity
Health Risk
RS147697594
Conflicting classifications of pathogenicity
Health Risk
RS148423275
Conflicting classifications of pathogenicity
Health Risk
RS185811440
Conflicting classifications of pathogenicity
SCP2-related disorder, SCP2-related disorder
Health Risk
RS202234745
Conflicting classifications of pathogenicity
Health Risk
RS2150121906
Conflicting classifications of pathogenicity
Health Risk
RS369597903
Conflicting classifications of pathogenicity
Health Risk
RS376582235
Conflicting classifications of pathogenicity
Health Risk
RS74638331
Conflicting classifications of pathogenicity
Health Risk
RS753547956
Conflicting classifications of pathogenicity
SCP2-related disorder, SCP2-related disorder
Health Risk
RS761545816
Conflicting classifications of pathogenicity
SCP2-related disorder, SCP2-related disorder
Health Risk
RS764929170
Conflicting classifications of pathogenicity
Health Risk
All Variants (33)
| RSID | Category | Clinical Significance | Conditions |
|---|---|---|---|
| RS143534838 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS147697594 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS148423275 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS185811440 | Health Risk | Conflicting classifications of pathogenicity | SCP2-related disorder, SCP2-related disorder |
| RS202234745 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS2150121906 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS369597903 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS376582235 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS74638331 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS753547956 | Health Risk | Conflicting classifications of pathogenicity | SCP2-related disorder, SCP2-related disorder |
| RS761545816 | Health Risk | Conflicting classifications of pathogenicity | SCP2-related disorder, SCP2-related disorder |
| RS764929170 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS774694600 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS1318177330 | Health Risk | Likely pathogenic | — |
| RS144132787 | Health Risk | Likely pathogenic | Sterol carrier protein 2 deficiency, SCP2-related disorder, Hepatocellular carcinoma |
| RS1557609323 | Health Risk | Likely pathogenic | — |
| RS2524439055 | Health Risk | Likely pathogenic | — |
| RS2524733814 | Health Risk | Likely pathogenic | — |
| RS370191484 | Health Risk | Likely pathogenic | — |
| RS1258568007 | Health Risk | Pathogenic | — |
| RS1316356500 | Health Risk | Pathogenic | — |
| RS1572119109 | Health Risk | Pathogenic | Sterol carrier protein 2 deficiency, Sterol carrier protein 2 deficiency |
| RS2150111242 | Health Risk | Pathogenic | — |
| RS2524498600 | Health Risk | Pathogenic | — |
| RS2524499368 | Health Risk | Pathogenic | — |
| RS2524652526 | Health Risk | Pathogenic | — |
| RS369561869 | Health Risk | Pathogenic | Sterol carrier protein 2 deficiency, SCP2-related disorder, Sterol carrier protein 2 deficiency |
| RS376277989 | Health Risk | Pathogenic | — |
| RS746730267 | Health Risk | Pathogenic | — |
| RS756309899 | Health Risk | Pathogenic | — |
| RS756891047 | Health Risk | Pathogenic | — |
| RS910513941 | Health Risk | Pathogenic | — |
| RS772506944 | Health Risk | Pathogenic/Likely pathogenic | Sterol carrier protein 2 deficiency, Sterol carrier protein 2 deficiency |