PIKFYVE Chromosome 2

Phosphoinositide kinase, FYVE-type zinc finger containing
26 variants 26 Health Risk

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What This Gene Does
Phosphorylated derivatives of phosphatidylinositol (PtdIns) regulate cytoskeletal functions, membrane trafficking, and receptor signaling by recruiting protein complexes to cell- and endosomal-membranes. Humans have multiple PtdIns proteins that differ by the degree and position of phosphorylation of the inositol ring. This gene encodes an enzyme (PIKfyve; also known as phosphatidylinositol-3-phosphate 5-kinase type III or PIPKIII) that phosphorylates the D-5 position in PtdIns and phosphatidylinositol-3-phosphate (PtdIns3P) to make PtdIns5P and PtdIns(3,5)biphosphate. The D-5 position also can be phosphorylated by type I PtdIns4P-5-kinases (PIP5Ks) that are encoded by distinct genes and preferentially phosphorylate D-4 phosphorylated PtdIns. In contrast, PIKfyve preferentially phosphorylates D-3 phosphorylated PtdIns. In addition to being a lipid kinase, PIKfyve also has protein kinase activity. PIKfyve regulates endomembrane homeostasis and plays a role in the biogenesis of endosome carrier vesicles from early endosomes. The protein plays a key role in cell entry of ebola virus and SARS-CoV-2 by endocytosis Mutations in this gene cause corneal fleck dystrophy (CFD); an autosomal dominant disorder characterized by numerous small white flecks present in all layers of the corneal stroma. Histologically, these flecks appear to be keratocytes distended with lipid and mucopolysaccharide filled intracytoplasmic vacuoles. [provided by RefSeq, Jul 2021]
Gene Info
Gene Group
"Zinc fingers FYVE-type|DEP domain containing"
Locus Type
gene with protein product
Location
2q34
Ensembl
ENSG00000115020
Associated Conditions (3)
Fleck corneal dystrophy
Inborn genetic diseases
PIKFYVE-related disorder
Key Variants
All Variants (26)
RSID Category Clinical Significance Conditions
RS144573813 Health Risk Conflicting classifications of pathogenicity Fleck corneal dystrophy, Fleck corneal dystrophy
RS144852646 Health Risk Conflicting classifications of pathogenicity Fleck corneal dystrophy, Inborn genetic diseases, Fleck corneal dystrophy
RS146673873 Health Risk Conflicting classifications of pathogenicity Fleck corneal dystrophy, Inborn genetic diseases, Fleck corneal dystrophy
RS373802805 Health Risk Conflicting classifications of pathogenicity Fleck corneal dystrophy, Inborn genetic diseases, Fleck corneal dystrophy
RS376604887 Health Risk Conflicting classifications of pathogenicity Fleck corneal dystrophy, Inborn genetic diseases, Fleck corneal dystrophy
RS377372888 Health Risk Conflicting classifications of pathogenicity Fleck corneal dystrophy, Fleck corneal dystrophy
RS767989671 Health Risk Conflicting classifications of pathogenicity Fleck corneal dystrophy, Inborn genetic diseases, Fleck corneal dystrophy
RS778006745 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS1189539018 Health Risk Likely pathogenic
RS1195336213 Health Risk Likely pathogenic Fleck corneal dystrophy, Fleck corneal dystrophy
RS1291587960 Health Risk Likely pathogenic PIKFYVE-related disorder, PIKFYVE-related disorder
RS1450294572 Health Risk Likely pathogenic PIKFYVE-related disorder, PIKFYVE-related disorder
RS1696928201 Health Risk Likely pathogenic
RS1699994369 Health Risk Likely pathogenic
RS2125298689 Health Risk Likely pathogenic Fleck corneal dystrophy, Fleck corneal dystrophy
RS780579562 Health Risk Likely pathogenic Fleck corneal dystrophy, Fleck corneal dystrophy
RS1003590403 Health Risk Pathogenic
RS1011857582 Health Risk Pathogenic PIKFYVE-related disorder, PIKFYVE-related disorder
RS121918336 Health Risk Pathogenic Fleck corneal dystrophy, Fleck corneal dystrophy
RS121918337 Health Risk Pathogenic Fleck corneal dystrophy, Fleck corneal dystrophy
RS2125682287 Health Risk Pathogenic
RS2125682979 Health Risk Pathogenic Fleck corneal dystrophy, Fleck corneal dystrophy
RS387907335 Health Risk Pathogenic Fleck corneal dystrophy, Fleck corneal dystrophy
RS869312464 Health Risk Pathogenic Fleck corneal dystrophy, Fleck corneal dystrophy
RS992128517 Health Risk Pathogenic Fleck corneal dystrophy, Fleck corneal dystrophy
RS1553525857 Health Risk Pathogenic/Likely pathogenic
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