PAX5 Chromosome 9
Paired box 5
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What This Gene Does
This gene encodes a member of the paired box (PAX) family of transcription factors. The central feature of this gene family is a novel, highly conserved DNA-binding motif, known as the paired box. Paired box transcription factors are important regulators in early development, and alterations in the expression of their genes are thought to contribute to neoplastic transformation. This gene encodes the B-cell lineage specific activator protein that is expressed at early, but not late stages of B-cell differentiation. Its expression has also been detected in developing CNS and testis and so the encoded protein may also play a role in neural development and spermatogenesis. This gene is located at 9p13, which is involved in t(9;14)(p13;q32) translocations recurring in small lymphocytic lymphomas of the plasmacytoid subtype, and in derived large-cell lymphomas. This translocation brings the potent E-mu enhancer of the IgH gene into close proximity of the PAX5 promoter, suggesting that the deregulation of transcription of this gene contributes to the pathogenesis of these lymphomas. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2013]
Gene Info
Gene Group
"PRD class homeoboxes and pseudogenes|Paired boxes|MicroRNA protein coding host genes"
Locus Type
gene with protein product
Location
9p13.2
Ensembl
ENSG00000196092
Associated Conditions (8)
Leukemia
acute lymphoblastic
susceptibility to
3
Inborn genetic diseases
PAX5-related disorder
Neurodevelopmental disorder
Acute lymphoid leukemia
Key Variants
RS137870876
Conflicting classifications of pathogenicity
Leukemia, acute lymphoblastic, susceptibility to
Health Risk
RS139492230
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS1830348981
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS2132472428
Conflicting classifications of pathogenicity
Leukemia, acute lymphoblastic, susceptibility to
Health Risk
RS371549995
Conflicting classifications of pathogenicity
PAX5-related disorder, Inborn genetic diseases, PAX5-related disorder
Health Risk
RS577863510
Conflicting classifications of pathogenicity
Neurodevelopmental disorder, Neurodevelopmental disorder
Health Risk
RS766161582
Conflicting classifications of pathogenicity
Leukemia, acute lymphoblastic, susceptibility to
Health Risk
RS1588104877
Likely pathogenic
Acute lymphoid leukemia, Acute lymphoid leukemia
Health Risk
RS1841274813
Likely pathogenic
Acute lymphoid leukemia, Acute lymphoid leukemia
Health Risk
RS2131591339
Likely pathogenic
Acute lymphoid leukemia, Acute lymphoid leukemia
Health Risk
RS2132424384
Likely pathogenic
Neurodevelopmental disorder, Leukemia, acute lymphoblastic
Health Risk
RS2132470416
Likely pathogenic
Acute lymphoid leukemia, Acute lymphoid leukemia
Health Risk
All Variants (24)
| RSID | Category | Clinical Significance | Conditions |
|---|---|---|---|
| RS137870876 | Health Risk | Conflicting classifications of pathogenicity | Leukemia, acute lymphoblastic, susceptibility to |
| RS139492230 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, Inborn genetic diseases |
| RS1830348981 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, Inborn genetic diseases |
| RS2132472428 | Health Risk | Conflicting classifications of pathogenicity | Leukemia, acute lymphoblastic, susceptibility to |
| RS371549995 | Health Risk | Conflicting classifications of pathogenicity | PAX5-related disorder, Inborn genetic diseases, PAX5-related disorder |
| RS577863510 | Health Risk | Conflicting classifications of pathogenicity | Neurodevelopmental disorder, Neurodevelopmental disorder |
| RS766161582 | Health Risk | Conflicting classifications of pathogenicity | Leukemia, acute lymphoblastic, susceptibility to |
| RS1588104877 | Health Risk | Likely pathogenic | Acute lymphoid leukemia, Acute lymphoid leukemia |
| RS1841274813 | Health Risk | Likely pathogenic | Acute lymphoid leukemia, Acute lymphoid leukemia |
| RS2131591339 | Health Risk | Likely pathogenic | Acute lymphoid leukemia, Acute lymphoid leukemia |
| RS2132424384 | Health Risk | Likely pathogenic | Neurodevelopmental disorder, Leukemia, acute lymphoblastic |
| RS2132470416 | Health Risk | Likely pathogenic | Acute lymphoid leukemia, Acute lymphoid leukemia |
| RS2132470584 | Health Risk | Likely pathogenic | Acute lymphoid leukemia, Acute lymphoid leukemia |
| RS2493186313 | Health Risk | Likely pathogenic | Acute lymphoid leukemia, Acute lymphoid leukemia |
| RS2494412874 | Health Risk | Likely pathogenic | Acute lymphoid leukemia, Acute lymphoid leukemia |
| RS2494512458 | Health Risk | Likely pathogenic | Acute lymphoid leukemia, Acute lymphoid leukemia |
| RS2494512979 | Health Risk | Likely pathogenic | Acute lymphoid leukemia, Acute lymphoid leukemia |
| RS2494556210 | Health Risk | Likely pathogenic | Acute lymphoid leukemia, Acute lymphoid leukemia |
| RS750194822 | Health Risk | Likely pathogenic | Acute lymphoid leukemia, Acute lymphoid leukemia |
| RS780753361 | Health Risk | Likely pathogenic | Acute lymphoid leukemia, Acute lymphoid leukemia, Acute lymphoid leukemia |
| RS926053251 | Health Risk | Likely pathogenic | Acute lymphoid leukemia, Acute lymphoid leukemia |
| RS1337956293 | Health Risk | Pathogenic | Neurodevelopmental disorder, Neurodevelopmental disorder |
| RS2132194720 | Health Risk | Pathogenic | Neurodevelopmental disorder, Leukemia, acute lymphoblastic |
| RS398123063 | Health Risk | risk factor | Leukemia, acute lymphoblastic, susceptibility to |