NCSTN Chromosome 1
Nicastrin
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What This Gene Does
This gene encodes a type I transmembrane glycoprotein that is an integral component of the multimeric gamma-secretase complex. The encoded protein cleaves integral membrane proteins, including Notch receptors and beta-amyloid precursor protein, and may be a stabilizing cofactor required for gamma-secretase complex assembly. The cleavage of beta-amyloid precursor protein yields amyloid beta peptide, the main component of the neuritic plaque and the hallmark lesion in the brains of patients with Alzheimer's disease; however, the nature of the encoded protein's role in Alzheimer's disease is not known for certain. Mutations in this gene are associated with familial acne inversa. A pseudogene of this gene is present on chromosome 21. Alternatively spliced transcript variants of this gene have been described, but the full-length nature of some of these variants has not been determined. [provided by RefSeq, Feb 2014]
Gene Info
Gene Group
Gamma-secretase complex subunits
Locus Type
gene with protein product
Location
1q23.2
Ensembl
ENSG00000162736
Associated Conditions (6)
Inborn genetic diseases
Acne inversa
familial
1
NCSTN-related disorder
Abnormality of the skin
Key Variants
RS149288103
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS1553210405
Conflicting classifications of pathogenicity
Acne inversa, familial, 1
Health Risk
RS200634807
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS202046846
Conflicting classifications of pathogenicity
Acne inversa, familial, 1
Health Risk
RS374951668
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS375632985
Conflicting classifications of pathogenicity
Acne inversa, familial, 1
Health Risk
RS1361408137
Likely pathogenic
Health Risk
RS1571202126
Likely pathogenic
Health Risk
RS2101899012
Likely pathogenic
Health Risk
RS1085307081
Pathogenic
Acne inversa, familial, 1
Health Risk
RS1266104510
Pathogenic
Health Risk
RS1347055289
Pathogenic
Acne inversa, familial, 1
Health Risk
All Variants (21)
| RSID | Category | Clinical Significance | Conditions |
|---|---|---|---|
| RS149288103 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, Inborn genetic diseases |
| RS1553210405 | Health Risk | Conflicting classifications of pathogenicity | Acne inversa, familial, 1 |
| RS200634807 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, Inborn genetic diseases |
| RS202046846 | Health Risk | Conflicting classifications of pathogenicity | Acne inversa, familial, 1 |
| RS374951668 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, Inborn genetic diseases |
| RS375632985 | Health Risk | Conflicting classifications of pathogenicity | Acne inversa, familial, 1 |
| RS1361408137 | Health Risk | Likely pathogenic | — |
| RS1571202126 | Health Risk | Likely pathogenic | — |
| RS2101899012 | Health Risk | Likely pathogenic | — |
| RS1085307081 | Health Risk | Pathogenic | Acne inversa, familial, 1 |
| RS1266104510 | Health Risk | Pathogenic | — |
| RS1347055289 | Health Risk | Pathogenic | Acne inversa, familial, 1 |
| RS1553210984 | Health Risk | Pathogenic | Acne inversa, familial, 1 |
| RS1553211087 | Health Risk | Pathogenic | Acne inversa, familial, 1 |
| RS2101889658 | Health Risk | Pathogenic | Acne inversa, familial, 1 |
| RS2101906549 | Health Risk | Pathogenic | — |
| RS2101909450 | Health Risk | Pathogenic | Abnormality of the skin, Abnormality of the skin |
| RS2525536152 | Health Risk | Pathogenic | Acne inversa, familial, 1 |
| RS2525537394 | Health Risk | Pathogenic | — |
| RS387906896 | Health Risk | Pathogenic | Acne inversa, familial, 1 |
| RS771414318 | Health Risk | Pathogenic | Acne inversa, familial, 1 |